ID F6HHY7_VITVI Unreviewed; 771 AA.
AC F6HHY7;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 27-MAR-2024, entry version 62.
DE RecName: Full=Zinc finger CCCH domain-containing protein 53 {ECO:0008006|Google:ProtNLM};
GN OrderedLocusNames=VIT_13s0158g00370 {ECO:0000313|EMBL:CCB51833.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CCB51833.1, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
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DR EMBL; FN595762; CCB51833.1; -; Genomic_DNA.
DR AlphaFoldDB; F6HHY7; -.
DR PaxDb; 29760-VIT_13s0158g00370-t01; -.
DR eggNOG; ENOG502QWIK; Eukaryota.
DR HOGENOM; CLU_028778_0_0_1; -.
DR InParanoid; F6HHY7; -.
DR Proteomes; UP000009183; Chromosome 13.
DR ExpressionAtlas; F6HHY7; baseline and differential.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd12458; RRM_AtC3H46_like; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 4.10.1000.10; Zinc finger, CCCH-type; 1.
DR InterPro; IPR034365; AtC3H46-like_RRM.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR24009; RNA-BINDING (RRM/RBD/RNP MOTIFS); 1.
DR PANTHER; PTHR24009:SF3; RNA-BINDING (RRM_RBD_RNP MOTIFS) FAMILY PROTEIN-RELATED; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF90229; CCCH zinc finger; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 246..273
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 381..457
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT ZN_FING 246..273
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 63..99
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 187..206
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 456..484
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 545..585
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 597..654
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 726..751
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 187..202
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 464..484
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 552..585
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 623..638
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 729..751
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 771 AA; 83401 MW; DF3A1A22453FF70E CRC64;
MDAYEATRIV FSRIQNLDPE NASKIMGLLL IQDHGEKEMI RLAFGPEALV HSVILKARKE
LGISSNTPST PSTPSSPSPF LSNNPLSQSR QTSFSSTSSR LLGAGGLNLP SPLAIPNPSS
SASSFSVFSD FQPQDDLISP NSAVGSSSSA MNSSSSPFYG GNDLIDEFQL QDQLSFLNDG
SPTLGPKNPD LFYSQQELAS SPGGGSGGDA MGFPSYGWGA AANGLPHRRS CSVSDICLAS
DDPASGFGWK PCLYFARGYC KNGTSCRFLH GGDSASVVGS EGAAMVGSPS KIEMMEQCHE
LLRSKSAQQQ RLAAASQIMA SASFPYSAKC MNFLLQQQQT DSQRAAAALM MGDDMHKFGR
SRLERGEFMN GGAGMVNPGS RQIYLTFPAD STFREEDVSN YFSIFGPVQD VRIPYQQKRM
FGFVTFVYPE TVKLILAKGN PHFVCDARVL VKPYKEKGKV PDKKQQQQQQ QVERGEFSAC
STPTGLDSRD PYDLQLGARM FYNTQDMLWR RKLEEQADLQ QAIELQGRRL MGLQLLDVKK
QQHHRALSTG APIPSPTHSP SFFNQPLILP SDRSSPEAPE ENCSSPATAI PVNAVAAEQQ
QQTVTTAAEK EFTGIDENGN GTGKESSHNE DSDLPESLEH NLPDSPFASP TKGAGEYLST
FSNASSEVEK NTTVSGSPAV NGNLITSSLL PATSTLDMAS FKSCYFQMPR FSSGHGLPKL
RKIEKYNQTD PTSDTICRES PSPPPDTSTT TTTTTAIIIN TILLTTIQMH T
//
