ID F6RPI9_XENTR Unreviewed; 685 AA.
AC F6RPI9;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 02-DEC-2020, sequence version 3.
DT 24-JAN-2024, entry version 58.
DE SubName: Full=Pentatricopeptide repeat domain 1 {ECO:0000313|Ensembl:ENSXETP00000021779};
DE SubName: Full=Pentatricopeptide repeat-containing protein 1, mitochondrial {ECO:0000313|RefSeq:XP_002931567.1};
GN Name=ptcd1 {ECO:0000313|Ensembl:ENSXETP00000021779,
GN ECO:0000313|RefSeq:XP_002931567.1,
GN ECO:0000313|Xenbase:XB-GENE-940576};
OS Xenopus tropicalis (Western clawed frog) (Silurana tropicalis).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana.
OX NCBI_TaxID=8364 {ECO:0000313|Ensembl:ENSXETP00000021779};
RN [1] {ECO:0000313|Ensembl:ENSXETP00000021779}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Nigerian {ECO:0000313|Ensembl:ENSXETP00000021779};
RX PubMed=20431018; DOI=10.1126/science.1183670;
RA Hellsten U., Harland R.M., Gilchrist M.J., Hendrix D., Jurka J.,
RA Kapitonov V., Ovcharenko I., Putnam N.H., Shu S., Taher L., Blitz I.L.,
RA Blumberg B., Dichmann D.S., Dubchak I., Amaya E., Detter J.C., Fletcher R.,
RA Gerhard D.S., Goodstein D., Graves T., Grigoriev I.V., Grimwood J.,
RA Kawashima T., Lindquist E., Lucas S.M., Mead P.E., Mitros T., Ogino H.,
RA Ohta Y., Poliakov A.V., Pollet N., Robert J., Salamov A., Sater A.K.,
RA Schmutz J., Terry A., Vize P.D., Warren W.C., Wells D., Wills A.,
RA Wilson R.K., Zimmerman L.B., Zorn A.M., Grainger R., Grammer T.,
RA Khokha M.K., Richardson P.M., Rokhsar D.S.;
RT "The genome of the Western clawed frog Xenopus tropicalis.";
RL Science 328:633-636(2010).
RN [2] {ECO:0000313|Ensembl:ENSXETP00000021779}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUN-2011) to UniProtKB.
RN [3] {ECO:0000313|RefSeq:XP_002931567.1}
RP IDENTIFICATION.
RC STRAIN=Nigerian {ECO:0000313|RefSeq:XP_002931567.1};
RC TISSUE=Liver and blood {ECO:0000313|RefSeq:XP_002931567.1};
RG RefSeq;
RL Submitted (SEP-2023) to UniProtKB.
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DR RefSeq; XP_002931567.1; XM_002931521.5.
DR Ensembl; ENSXETT00000021779; ENSXETP00000021779; ENSXETG00000009891.
DR GeneID; 100135205; -.
DR KEGG; xtr:100135205; -.
DR CTD; 26024; -.
DR Xenbase; XB-GENE-940576; ptcd1.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_021952_0_0_1; -.
DR OMA; YALQVWQ; -.
DR OrthoDB; 1025498at2759; -.
DR TreeFam; TF324792; -.
DR Proteomes; UP000008143; Chromosome 9.
DR Bgee; ENSXETG00000009891; Expressed in skeletal muscle tissue and 13 other cell types or tissues.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 1.
DR PANTHER; PTHR24014; 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2; 1.
DR PANTHER; PTHR24014:SF6; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL; 1.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 3.
DR PROSITE; PS51375; PPR; 4.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008143}.
FT REPEAT 167..201
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 241..275
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 276..312
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 577..611
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 685 AA; 77951 MW; C6378AA0F8616AAA CRC64;
MRLLQHLTRY LSARSACQTQ LVCGKILAAK DLSSSIHWFI GKQHKRYFTS AISLSQISSR
QRTFVLSREN NNTNPDVHSM EDETFGTLAE KYSSRTFFKK TSPELQKLGH EEDNDGEEPN
YPIRWRQRNT PYWYFLKCKA KIKEDKLAEA LELFEVKMLQ EERLQPDESN YTILIGGCGR
AGYVKKAFRL YADMKKRGLV PTDATYTALF NACAESPWKE SGLQQALKLR QELKAKNIRL
NLVTYQSLLK VCALCSDLQN SMEIFKEIVQ EGHIVTKDTF NILLMSCIKN KDIGFRYTLQ
VWRQMLRLGI KPDNSTYNLL LRATRDCGIG DSAEASALLL SSKEPTPLRL KAKTGKHIHG
MKKKANTSEL DVEMLEKQLF LSKSTQLRIS DSDGVDTQEN AKGVNTISHP PRSQEICDSL
ILTSSASLHL PNLLDEPANT NVIVSLGSVF TPSDRLALIG GMEGIIQKMH NDKVFPTIKT
FTLLAEIIQP DCKRESALFN IMDSANVKAD VTFFNTLIRK RSKLINLHSA KELLPILAQK
GISPNIQTFC GLAISCHNAE EGLKLLEDMT NSGVIPNTYI YSTLISAAVK RLDYAYLLDI
LRDMKKRNVA PNEVIIHQLE FASQYPPNYD KYKSKDVFLE KIDGFRGYYN RWLNWMAAQE
TSHPWKKYRY KSKSKENSSQ ISGDE
//