ID F8SQA8_9MYCO Unreviewed; 170 AA.
AC F8SQA8;
DT 21-SEP-2011, integrated into UniProtKB/TrEMBL.
DT 21-SEP-2011, sequence version 1.
DT 24-JAN-2024, entry version 55.
DE RecName: Full=Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};
GN Name=ybeY {ECO:0000256|HAMAP-Rule:MF_00009,
GN ECO:0000313|EMBL:TDH19560.1};
GN ORFNames=BKG76_01800 {ECO:0000313|EMBL:OHU30517.1}, CCUG63697_00939
GN {ECO:0000313|EMBL:TDZ52458.1}, EJ571_23810
GN {ECO:0000313|EMBL:TDH19560.1};
OS Mycobacteroides franklinii.
OC Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae;
OC Mycobacteroides.
OX NCBI_TaxID=948102 {ECO:0000313|EMBL:AEI54858.1};
RN [1] {ECO:0000313|EMBL:AEI54858.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=CV002 {ECO:0000313|EMBL:AEI54858.1};
RX PubMed=21888796; DOI=10.3201/eid1709.101667;
RA Simmon K.E., Brown-Elliott B.A., Ridge P.G., Durtschi J.D., Bridge Mann L.,
RA Slechta E.S., Steigerwalt A.G., Moser B.D., Whitney A.M., Brown J.M.,
RA Voelkerding K.V., McGowan K.L., Reilly A.F., Kirn T.J., Butler W.R.,
RA Edelstein P.H., Wallace R.J.Jr., Petti C.A.;
RT "Mycobacterium chelonae-abscessus Complex Associated with Sinopulmonary
RT Disease, Northeastern USA.";
RL Emerg. Infect. Dis. 17:1692-1700(2011).
RN [2] {ECO:0000313|EMBL:OHU30517.1, ECO:0000313|Proteomes:UP000179616}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=1559 {ECO:0000313|EMBL:OHU30517.1,
RC ECO:0000313|Proteomes:UP000179616};
RA Fogelson S.B., Camus A.C., Lorenz W., Vasireddy R., Vasireddy S., Smith T.,
RA Brown-Elliott B.A., Wallace R.J.Jr., Hasan N.A., Reischl U., Sanchez S.;
RT "Evaluation of Human, Veterinary and Environmental Mycobacterium chelonae
RT Isolates by Core Genome Phylogenomic Analysis, Targeted Gene Comparison,
RT and Anti-microbial Susceptibility Patterns: A Tale of Mistaken
RT Identities.";
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:TDH19560.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=DSM 45524 {ECO:0000313|EMBL:TDH19560.1};
RA Behra P.R.K., Das S., Pettersson B.M.F., Shirreff L., Ducote T.,
RA Jacobsson K.-G., Ennis D.G., Kirsebom L.A.;
RL Submitted (DEC-2018) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|Proteomes:UP000295165, ECO:0000313|Proteomes:UP000295627}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCUG 63697 {ECO:0000313|EMBL:TDZ52458.1,
RC ECO:0000313|Proteomes:UP000295165}, and DSM 45524
RC {ECO:0000313|EMBL:TDH19560.1, ECO:0000313|Proteomes:UP000295627};
RX PubMed=30872669; DOI=.1038/s41598-019-40922-x;
RA Behra P.R., Das S., Pettersson B.M., Shirreff L., DuCote T.,
RA Jacobsson K.G., Ennis D.G., Kirsebom L.A.;
RT "Extended insight into the Mycobacterium chelonae-abscessus complex through
RT whole genome sequencing of Mycobacterium salmoniphilum outbreak and
RT Mycobacterium salmoniphilum-like strains.";
RL Sci. Rep. 9:4603-4603(2019).
CC -!- FUNCTION: Single strand-specific metallo-endoribonuclease involved in
CC late-stage 70S ribosome quality control and in maturation of the 3'
CC terminus of the 16S rRNA. {ECO:0000256|HAMAP-Rule:MF_00009}.
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000256|HAMAP-Rule:MF_00009};
CC Note=Binds 1 zinc ion. {ECO:0000256|HAMAP-Rule:MF_00009};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00009}.
CC -!- SIMILARITY: Belongs to the endoribonuclease YbeY family.
CC {ECO:0000256|ARBA:ARBA00010875, ECO:0000256|HAMAP-Rule:MF_00009}.
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DR EMBL; HQ661996; AEI54858.1; -; Genomic_DNA.
DR EMBL; MLIK01000004; OHU30517.1; -; Genomic_DNA.
DR EMBL; RXLR01000019; TDH19560.1; -; Genomic_DNA.
DR EMBL; PECC01000026; TDZ52458.1; -; Genomic_DNA.
DR RefSeq; WP_070935438.1; NZ_RXLR01000019.1.
DR AlphaFoldDB; F8SQA8; -.
DR STRING; 948102.BKG76_01800; -.
DR GeneID; 57165516; -.
DR OrthoDB; 9807740at2; -.
DR Proteomes; UP000179616; Unassembled WGS sequence.
DR Proteomes; UP000295165; Unassembled WGS sequence.
DR Proteomes; UP000295627; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-UniRule.
DR Gene3D; 3.40.390.30; Metalloproteases ('zincins'), catalytic domain; 1.
DR HAMAP; MF_00009; Endoribonucl_YbeY; 1.
DR InterPro; IPR023091; MetalPrtase_cat_dom_sf_prd.
DR InterPro; IPR002036; YbeY.
DR InterPro; IPR020549; YbeY_CS.
DR NCBIfam; TIGR00043; rRNA maturation RNase YbeY; 1.
DR PANTHER; PTHR46986; ENDORIBONUCLEASE YBEY, CHLOROPLASTIC; 1.
DR PANTHER; PTHR46986:SF1; ENDORIBONUCLEASE YBEY, CHLOROPLASTIC; 1.
DR Pfam; PF02130; YbeY; 1.
DR SUPFAM; SSF55486; Metalloproteases ('zincins'), catalytic domain; 1.
DR PROSITE; PS01306; UPF0054; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00009};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_00009};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00009};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|HAMAP-
KW Rule:MF_00009}; Metalloprotease {ECO:0000313|EMBL:AEI54858.1};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00009};
KW Protease {ECO:0000313|EMBL:AEI54858.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000295165};
KW Ribosome biogenesis {ECO:0000256|HAMAP-Rule:MF_00009};
KW rRNA processing {ECO:0000256|HAMAP-Rule:MF_00009};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|HAMAP-Rule:MF_00009}.
FT BINDING 118
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_note="catalytic"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00009"
FT BINDING 122
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_note="catalytic"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00009"
FT BINDING 128
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_note="catalytic"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00009"
SQ SEQUENCE 170 AA; 18782 MW; 3D7501B3CF33AD89 CRC64;
MSIEVVNESG VDVAEGELVS VARFAIAAMD VHPAAELSMM LVDLAAMADL HMRWMDLPGP
TDVMSFPMDE LEPGGRPDAP EPGPSMLGDI VLCPQFAAEQ AEAAGHSLAH ELALLTVHGV
LHLLGYDHAE PEEEREMFAL QNQLLQDWYE QQAQLYRDSR LLDKSRNFDE
//