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Database: UniProt
Entry: F8SQA8_9MYCO
LinkDB: F8SQA8_9MYCO
Original site: F8SQA8_9MYCO 
ID   F8SQA8_9MYCO            Unreviewed;       170 AA.
AC   F8SQA8;
DT   21-SEP-2011, integrated into UniProtKB/TrEMBL.
DT   21-SEP-2011, sequence version 1.
DT   24-JAN-2024, entry version 55.
DE   RecName: Full=Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009};
DE            EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};
GN   Name=ybeY {ECO:0000256|HAMAP-Rule:MF_00009,
GN   ECO:0000313|EMBL:TDH19560.1};
GN   ORFNames=BKG76_01800 {ECO:0000313|EMBL:OHU30517.1}, CCUG63697_00939
GN   {ECO:0000313|EMBL:TDZ52458.1}, EJ571_23810
GN   {ECO:0000313|EMBL:TDH19560.1};
OS   Mycobacteroides franklinii.
OC   Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae;
OC   Mycobacteroides.
OX   NCBI_TaxID=948102 {ECO:0000313|EMBL:AEI54858.1};
RN   [1] {ECO:0000313|EMBL:AEI54858.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=CV002 {ECO:0000313|EMBL:AEI54858.1};
RX   PubMed=21888796; DOI=10.3201/eid1709.101667;
RA   Simmon K.E., Brown-Elliott B.A., Ridge P.G., Durtschi J.D., Bridge Mann L.,
RA   Slechta E.S., Steigerwalt A.G., Moser B.D., Whitney A.M., Brown J.M.,
RA   Voelkerding K.V., McGowan K.L., Reilly A.F., Kirn T.J., Butler W.R.,
RA   Edelstein P.H., Wallace R.J.Jr., Petti C.A.;
RT   "Mycobacterium chelonae-abscessus Complex Associated with Sinopulmonary
RT   Disease, Northeastern USA.";
RL   Emerg. Infect. Dis. 17:1692-1700(2011).
RN   [2] {ECO:0000313|EMBL:OHU30517.1, ECO:0000313|Proteomes:UP000179616}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=1559 {ECO:0000313|EMBL:OHU30517.1,
RC   ECO:0000313|Proteomes:UP000179616};
RA   Fogelson S.B., Camus A.C., Lorenz W., Vasireddy R., Vasireddy S., Smith T.,
RA   Brown-Elliott B.A., Wallace R.J.Jr., Hasan N.A., Reischl U., Sanchez S.;
RT   "Evaluation of Human, Veterinary and Environmental Mycobacterium chelonae
RT   Isolates by Core Genome Phylogenomic Analysis, Targeted Gene Comparison,
RT   and Anti-microbial Susceptibility Patterns: A Tale of Mistaken
RT   Identities.";
RL   Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:TDH19560.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=DSM 45524 {ECO:0000313|EMBL:TDH19560.1};
RA   Behra P.R.K., Das S., Pettersson B.M.F., Shirreff L., Ducote T.,
RA   Jacobsson K.-G., Ennis D.G., Kirsebom L.A.;
RL   Submitted (DEC-2018) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|Proteomes:UP000295165, ECO:0000313|Proteomes:UP000295627}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CCUG 63697 {ECO:0000313|EMBL:TDZ52458.1,
RC   ECO:0000313|Proteomes:UP000295165}, and DSM 45524
RC   {ECO:0000313|EMBL:TDH19560.1, ECO:0000313|Proteomes:UP000295627};
RX   PubMed=30872669; DOI=.1038/s41598-019-40922-x;
RA   Behra P.R., Das S., Pettersson B.M., Shirreff L., DuCote T.,
RA   Jacobsson K.G., Ennis D.G., Kirsebom L.A.;
RT   "Extended insight into the Mycobacterium chelonae-abscessus complex through
RT   whole genome sequencing of Mycobacterium salmoniphilum outbreak and
RT   Mycobacterium salmoniphilum-like strains.";
RL   Sci. Rep. 9:4603-4603(2019).
CC   -!- FUNCTION: Single strand-specific metallo-endoribonuclease involved in
CC       late-stage 70S ribosome quality control and in maturation of the 3'
CC       terminus of the 16S rRNA. {ECO:0000256|HAMAP-Rule:MF_00009}.
CC   -!- COFACTOR:
CC       Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC         Evidence={ECO:0000256|HAMAP-Rule:MF_00009};
CC       Note=Binds 1 zinc ion. {ECO:0000256|HAMAP-Rule:MF_00009};
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00009}.
CC   -!- SIMILARITY: Belongs to the endoribonuclease YbeY family.
CC       {ECO:0000256|ARBA:ARBA00010875, ECO:0000256|HAMAP-Rule:MF_00009}.
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DR   EMBL; HQ661996; AEI54858.1; -; Genomic_DNA.
DR   EMBL; MLIK01000004; OHU30517.1; -; Genomic_DNA.
DR   EMBL; RXLR01000019; TDH19560.1; -; Genomic_DNA.
DR   EMBL; PECC01000026; TDZ52458.1; -; Genomic_DNA.
DR   RefSeq; WP_070935438.1; NZ_RXLR01000019.1.
DR   AlphaFoldDB; F8SQA8; -.
DR   STRING; 948102.BKG76_01800; -.
DR   GeneID; 57165516; -.
DR   OrthoDB; 9807740at2; -.
DR   Proteomes; UP000179616; Unassembled WGS sequence.
DR   Proteomes; UP000295165; Unassembled WGS sequence.
DR   Proteomes; UP000295627; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
DR   GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR   GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.40.390.30; Metalloproteases ('zincins'), catalytic domain; 1.
DR   HAMAP; MF_00009; Endoribonucl_YbeY; 1.
DR   InterPro; IPR023091; MetalPrtase_cat_dom_sf_prd.
DR   InterPro; IPR002036; YbeY.
DR   InterPro; IPR020549; YbeY_CS.
DR   NCBIfam; TIGR00043; rRNA maturation RNase YbeY; 1.
DR   PANTHER; PTHR46986; ENDORIBONUCLEASE YBEY, CHLOROPLASTIC; 1.
DR   PANTHER; PTHR46986:SF1; ENDORIBONUCLEASE YBEY, CHLOROPLASTIC; 1.
DR   Pfam; PF02130; YbeY; 1.
DR   SUPFAM; SSF55486; Metalloproteases ('zincins'), catalytic domain; 1.
DR   PROSITE; PS01306; UPF0054; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00009};
KW   Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW   Rule:MF_00009};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00009};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|HAMAP-
KW   Rule:MF_00009}; Metalloprotease {ECO:0000313|EMBL:AEI54858.1};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00009};
KW   Protease {ECO:0000313|EMBL:AEI54858.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000295165};
KW   Ribosome biogenesis {ECO:0000256|HAMAP-Rule:MF_00009};
KW   rRNA processing {ECO:0000256|HAMAP-Rule:MF_00009};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|HAMAP-Rule:MF_00009}.
FT   BINDING         118
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_note="catalytic"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00009"
FT   BINDING         122
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_note="catalytic"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00009"
FT   BINDING         128
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_note="catalytic"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00009"
SQ   SEQUENCE   170 AA;  18782 MW;  3D7501B3CF33AD89 CRC64;
     MSIEVVNESG VDVAEGELVS VARFAIAAMD VHPAAELSMM LVDLAAMADL HMRWMDLPGP
     TDVMSFPMDE LEPGGRPDAP EPGPSMLGDI VLCPQFAAEQ AEAAGHSLAH ELALLTVHGV
     LHLLGYDHAE PEEEREMFAL QNQLLQDWYE QQAQLYRDSR LLDKSRNFDE
//
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