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Database: UniProt
Entry: G0S5H2_CHATD
LinkDB: G0S5H2_CHATD
Original site: G0S5H2_CHATD 
ID   G0S5H2_CHATD            Unreviewed;       769 AA.
AC   G0S5H2;
DT   19-OCT-2011, integrated into UniProtKB/TrEMBL.
DT   19-OCT-2011, sequence version 1.
DT   24-JAN-2024, entry version 50.
DE   RecName: Full=Sm domain-containing protein {ECO:0000259|PROSITE:PS52002};
GN   ORFNames=CTHT_0032950 {ECO:0000313|EMBL:EGS21437.1};
OS   Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
OS   (Thermochaetoides thermophila).
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Sordariomycetidae; Sordariales; Chaetomiaceae; Thermochaetoides.
OX   NCBI_TaxID=759272 {ECO:0000313|Proteomes:UP000008066};
RN   [1] {ECO:0000313|EMBL:EGS21437.1, ECO:0000313|Proteomes:UP000008066}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 1495 / CBS 144.50 / IMI 039719
RC   {ECO:0000313|Proteomes:UP000008066};
RX   PubMed=21784248; DOI=10.1016/j.cell.2011.06.039;
RA   Amlacher S., Sarges P., Flemming D., van Noort V., Kunze R., Devos D.P.,
RA   Arumugam M., Bork P., Hurt E.;
RT   "Insight into structure and assembly of the nuclear pore complex by
RT   utilizing the genome of a eukaryotic thermophile.";
RL   Cell 146:277-289(2011).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the snRNP Sm proteins family.
CC       {ECO:0000256|ARBA:ARBA00006850}.
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DR   EMBL; GL988041; EGS21437.1; -; Genomic_DNA.
DR   RefSeq; XP_006693733.1; XM_006693670.1.
DR   AlphaFoldDB; G0S5H2; -.
DR   STRING; 759272.G0S5H2; -.
DR   GeneID; 18257333; -.
DR   KEGG; cthr:CTHT_0032950; -.
DR   eggNOG; KOG3293; Eukaryota.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_008514_1_1_1; -.
DR   OMA; TEIREIC; -.
DR   OrthoDB; 1381922at2759; -.
DR   Proteomes; UP000008066; Unassembled WGS sequence.
DR   GO; GO:0097525; C:spliceosomal snRNP complex; IEA:UniProt.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR   GO; GO:0000956; P:nuclear-transcribed mRNA catabolic process; IEA:InterPro.
DR   CDD; cd01723; LSm4; 1.
DR   Gene3D; 2.30.30.100; -; 1.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR   InterPro; IPR034101; Lsm4.
DR   InterPro; IPR027141; LSm4/Sm_D1/D3.
DR   InterPro; IPR010920; LSM_dom_sf.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR047575; Sm.
DR   InterPro; IPR001163; Sm_dom_euk/arc.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   PANTHER; PTHR23338; SMALL NUCLEAR RIBONUCLEOPROTEIN SM; 1.
DR   PANTHER; PTHR23338:SF16; U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4; 1.
DR   Pfam; PF01423; LSM; 1.
DR   Pfam; PF13812; PPR_3; 1.
DR   SMART; SM00651; Sm; 1.
DR   SUPFAM; SSF50182; Sm-like ribonucleoproteins; 1.
DR   PROSITE; PS51375; PPR; 1.
DR   PROSITE; PS52002; SM; 1.
PE   3: Inferred from homology;
KW   mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW   mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008066};
KW   Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW   Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT   DOMAIN          2..75
FT                   /note="Sm"
FT                   /evidence="ECO:0000259|PROSITE:PS52002"
FT   REPEAT          512..546
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REGION          204..225
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        209..225
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   769 AA;  87566 MW;  19CFEED6E3E08765 CRC64;
     MLPLGLLTAA QGHPMLVELK NGETLNGHLV QCDTWMNLTL REVVQTSPEG DKFMRLPEVY
     VKGNNIKYLR VPDEIIDIVK EQQQQQHRGA VVGEEEVALR EVDGVARGVH ECDSCWDSLN
     GTLATGMGVV QRHRHLQRQQ QQLLLLRDYE TTTWRNSFWG TSLGSRFGEK ARQEDVGAQQ
     FEHAVGDRCM TRRKHDWEVW GEGSRGNAFS PQPLPQQASV SSSQGPARVQ MQHENAPVTA
     DDLIKSEASF PQRTFQASTE VIYEALRGLR ERRDGAIKIR RFVEHLVKER GEQPNEALYE
     ALVVANWHTT TGSAGELRAI MKEMKKLGIK FSESFYHSAL RLLAIHPDYI TRTIILDKMN
     EEGILLNDDG KCSVALGYLR DGQYEMALDY LDQICHEGVD VPGWMFDIFF FVLTRHGFLD
     EALHLLQYLV DRAEGFLNAV PLNSWYYFLD ECSKAFYYEG TKFVWENLVR PGILHPSDGV
     MINVLNTASR YNDAELATKV IEQLSARKIK LTANHYEALL DCYANIGDLQ NAFQVLSIMA
     DAGIMPDQSS TRSLYLFLKS HPERADEVVK ILNELSKDHR IPVAAMNVVL EALLKAGDMV
     KAMHVYRDLR YLCKGGPNQQ TFQMLLEQCK SSEVAGFLTS EMHQFSVRSS PEILDHVIRC
     FAFDGLLDAV LSYLSEWNRS PMRRGWISTP TLTAVLERCY RARDVRVWRV VDEAQRRNVR
     IDPQIMEVLE AEIPRADAYR ELPAHGWATS DEAYQSKEVS SDSKDYASR
//
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