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Database: UniProt
Entry: G1SDQ5_RABIT
LinkDB: G1SDQ5_RABIT
Original site: G1SDQ5_RABIT 
ID   G1SDQ5_RABIT            Unreviewed;       964 AA.
AC   G1SDQ5;
DT   19-OCT-2011, integrated into UniProtKB/TrEMBL.
DT   19-OCT-2011, sequence version 1.
DT   24-JAN-2024, entry version 52.
DE   SubName: Full=VPS50 subunit of EARP/GARPII complex {ECO:0000313|Ensembl:ENSOCUP00000000546.2};
GN   Name=VPS50 {ECO:0000313|Ensembl:ENSOCUP00000000546.2};
OS   Oryctolagus cuniculus (Rabbit).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus.
OX   NCBI_TaxID=9986 {ECO:0000313|Ensembl:ENSOCUP00000000546.2, ECO:0000313|Proteomes:UP000001811};
RN   [1] {ECO:0000313|Ensembl:ENSOCUP00000000546.2, ECO:0000313|Proteomes:UP000001811}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Thorbecke inbred {ECO:0000313|Ensembl:ENSOCUP00000000546.2,
RC   ECO:0000313|Proteomes:UP000001811};
RX   PubMed=21993624; DOI=10.1038/nature10530;
RA   Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S.,
RA   Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B.,
RA   Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.,
RA   Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M.,
RA   Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M.,
RA   Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D.,
RA   Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J.,
RA   Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S.,
RA   Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A.,
RA   Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R.,
RA   Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R.,
RA   Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C.,
RA   Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E.,
RA   Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N.,
RA   Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.;
RT   "A high-resolution map of human evolutionary constraint using 29 mammals.";
RL   Nature 478:476-482(2011).
RN   [2] {ECO:0000313|Ensembl:ENSOCUP00000000546.2}
RP   IDENTIFICATION.
RC   STRAIN=Thorbecke {ECO:0000313|Ensembl:ENSOCUP00000000546.2};
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
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DR   EMBL; AAGW02035394; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AAGW02035395; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AAGW02035396; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AAGW02035397; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AAGW02035398; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AAGW02035399; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; XP_008259945.1; XM_008261723.2.
DR   AlphaFoldDB; G1SDQ5; -.
DR   SMR; G1SDQ5; -.
DR   STRING; 9986.ENSOCUP00000000546; -.
DR   PaxDb; 9986-ENSOCUP00000000546; -.
DR   Ensembl; ENSOCUT00000000629.4; ENSOCUP00000000546.2; ENSOCUG00000000625.4.
DR   GeneID; 100353605; -.
DR   KEGG; ocu:100353605; -.
DR   CTD; 55610; -.
DR   eggNOG; KOG2939; Eukaryota.
DR   GeneTree; ENSGT00390000003442; -.
DR   HOGENOM; CLU_009513_1_0_1; -.
DR   InParanoid; G1SDQ5; -.
DR   OMA; KIPAMGF; -.
DR   OrthoDB; 7240at2759; -.
DR   Proteomes; UP000001811; Chromosome 10.
DR   Bgee; ENSOCUG00000000625; Expressed in prefrontal cortex and 15 other cell types or tissues.
DR   GO; GO:0005829; C:cytosol; IEA:GOC.
DR   GO; GO:1990745; C:EARP complex; IEA:Ensembl.
DR   GO; GO:0000149; F:SNARE binding; IEA:Ensembl.
DR   GO; GO:0032456; P:endocytic recycling; IEA:Ensembl.
DR   GO; GO:0042147; P:retrograde transport, endosome to Golgi; IEA:InterPro.
DR   InterPro; IPR019514; Syndetin_C.
DR   InterPro; IPR040047; VPS50.
DR   InterPro; IPR019515; VPS54_N.
DR   PANTHER; PTHR13258:SF0; SYNDETIN; 1.
DR   PANTHER; PTHR13258; UNCHARACTERIZED; 1.
DR   Pfam; PF10474; Syndetin_C; 1.
DR   Pfam; PF10475; Vps54_N; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001811}.
FT   DOMAIN          54..345
FT                   /note="Vacuolar protein sorting-associated protein 54 N-
FT                   terminal"
FT                   /evidence="ECO:0000259|Pfam:PF10475"
FT   DOMAIN          723..957
FT                   /note="Syndetin C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF10474"
FT   REGION          1..25
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          542..564
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          216..243
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        1..16
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        549..564
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   964 AA;  111089 MW;  E5A18A12ECE622D3 CRC64;
     MQKIKSLMTR QGLKSPPESL SDLGAIENLR VPGKEEFREL REQPSDPQAE QELINSIEQV
     YFSADSFDIV KYELEKLPPV LNLQELEEYR DKLKQQQAAV SKKVADLILE KQPAYVKELE
     RVTSLQTGLQ LAAVICTNGR RHLNIAKEGF TQASLGLLAN QRKRQLLIGL LKSLRTIKTL
     QRTDVRLSEM LEEEDYPGAI QLCLECQNAA STFKHYSCIS ELNSKLQDTL EQIEEQLDVA
     LSKICKNFDI NHYTKVQQAY RLLGKTQTAM DQLHMHFTQA IHNTVFQVVL GYVELCACNT
     DTKFQKLQYK DLCTHVIPDS YIPCLADLCK ALWEVMLSYY RTMEWHEKHD GADTAAAAEG
     SNIMGTEETN FDRGYIKKKL EHGLTRIWQD VQLKVKTYLL GTDLSIFKYD DFIFVLDIIS
     RLMQVGEEFC GSKSEVLQES IRKQSVNYFK NYHRTRLDEL RMFLENETWE LCPVKSNFSI
     LQLHEFKFLE QSRSPSVSPS KQPVSTSSKS VTLFEQYCSG GNPFEIQANH KDEETEDVLA
     SNGYESDEQE KSAYQEYDSD SDVPEELKRD YVDEQTGDAP VKSVSRETLK SRKKSDYSLN
     KVNAPILTNT TLNVIRLVGK YMQMMNILKP IAFDVIHFMS QLFDYYLYAI YTFFGRNDSL
     ESTGLGLSSS RLRTTLNRIQ ESLIDLEVSA DPAATLTAAE ERREKVPSPH LSHLVVLTAG
     DTLYGLAERV VATESLVFLA EQFEFLQPHL DAVMPAVKKP FLQQFYSQTV STASELRKPI
     YWIVAGKAID YEQMLLLMAN VKWDVKEIMS QHNIYVDALL KEFEQFNRRL NEVSKRVRIP
     LPVSNILWEH CIRLANRTIV EGYANVKKCS NEGRALMQLD FQQFLMKLEK LTDIRPIPDK
     EFVETYIKAY YLTENDMERW IKEHREYSTK QLTNLVNVCL GSHINKKARQ KLLAAIDDLD
     RPRR
//
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