GenomeNet

Database: UniProt
Entry: G1T8M9_RABIT
LinkDB: G1T8M9_RABIT
Original site: G1T8M9_RABIT 
ID   G1T8M9_RABIT            Unreviewed;      1457 AA.
AC   G1T8M9;
DT   19-OCT-2011, integrated into UniProtKB/TrEMBL.
DT   13-NOV-2013, sequence version 2.
DT   24-JAN-2024, entry version 75.
DE   SubName: Full=Leucine rich pentatricopeptide repeat containing {ECO:0000313|Ensembl:ENSOCUP00000012939.3};
GN   Name=LRPPRC {ECO:0000313|Ensembl:ENSOCUP00000012939.3};
OS   Oryctolagus cuniculus (Rabbit).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus.
OX   NCBI_TaxID=9986 {ECO:0000313|Ensembl:ENSOCUP00000012939.3, ECO:0000313|Proteomes:UP000001811};
RN   [1] {ECO:0000313|Ensembl:ENSOCUP00000012939.3, ECO:0000313|Proteomes:UP000001811}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Thorbecke inbred {ECO:0000313|Ensembl:ENSOCUP00000012939.3,
RC   ECO:0000313|Proteomes:UP000001811};
RX   PubMed=21993624; DOI=10.1038/nature10530;
RA   Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S.,
RA   Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B.,
RA   Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.,
RA   Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M.,
RA   Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M.,
RA   Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D.,
RA   Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J.,
RA   Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S.,
RA   Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A.,
RA   Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R.,
RA   Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R.,
RA   Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C.,
RA   Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E.,
RA   Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N.,
RA   Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.;
RT   "A high-resolution map of human evolutionary constraint using 29 mammals.";
RL   Nature 478:476-482(2011).
RN   [2] {ECO:0000313|Ensembl:ENSOCUP00000012939.3}
RP   IDENTIFICATION.
RC   STRAIN=Thorbecke {ECO:0000313|Ensembl:ENSOCUP00000012939.3};
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AAGW02006150; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AAGW02006151; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AAGW02006152; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   STRING; 9986.ENSOCUP00000012939; -.
DR   PaxDb; 9986-ENSOCUP00000012939; -.
DR   Ensembl; ENSOCUT00000015057.4; ENSOCUP00000012939.3; ENSOCUG00000015046.4.
DR   eggNOG; KOG4318; Eukaryota.
DR   GeneTree; ENSGT00960000186682; -.
DR   HOGENOM; CLU_006166_0_0_1; -.
DR   InParanoid; G1T8M9; -.
DR   OMA; HIDRNKI; -.
DR   TreeFam; TF323626; -.
DR   Proteomes; UP000001811; Chromosome 2.
DR   Bgee; ENSOCUG00000015046; Expressed in skeletal muscle tissue and 16 other cell types or tissues.
DR   GO; GO:0000794; C:condensed nuclear chromosome; IEA:Ensembl.
DR   GO; GO:0005874; C:microtubule; IEA:Ensembl.
DR   GO; GO:0042645; C:mitochondrial nucleoid; IEA:Ensembl.
DR   GO; GO:0048471; C:perinuclear region of cytoplasm; IEA:Ensembl.
DR   GO; GO:1990904; C:ribonucleoprotein complex; IEA:Ensembl.
DR   GO; GO:0048487; F:beta-tubulin binding; IEA:Ensembl.
DR   GO; GO:0003723; F:RNA binding; IEA:Ensembl.
DR   GO; GO:0003697; F:single-stranded DNA binding; IEA:Ensembl.
DR   GO; GO:0031625; F:ubiquitin protein ligase binding; IEA:Ensembl.
DR   GO; GO:0000957; P:mitochondrial RNA catabolic process; IEA:Ensembl.
DR   GO; GO:0000961; P:negative regulation of mitochondrial RNA catabolic process; IEA:Ensembl.
DR   GO; GO:0070129; P:regulation of mitochondrial translation; IEA:Ensembl.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR033490; LRP130.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR033443; PPR_long.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 2.
DR   PANTHER; PTHR46669; LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL; 1.
DR   PANTHER; PTHR46669:SF1; LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL; 1.
DR   Pfam; PF01535; PPR; 3.
DR   Pfam; PF13812; PPR_3; 1.
DR   Pfam; PF17177; PPR_long; 1.
DR   PROSITE; PS51375; PPR; 4.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000001811}.
FT   REPEAT          260..294
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          286..393
FT                   /note="Pentacotripeptide-repeat region of PRORP"
FT                   /evidence="ECO:0000259|Pfam:PF17177"
FT   REPEAT          295..329
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          811..845
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          1018..1052
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   1457 AA;  164283 MW;  ACD87A7B39FD3F35 CRC64;
     MPNRANYFFT QIGFPVLQSQ TTTASPYAWR AGSLVRPAPV DPAVTCSSCP SEERASRRGD
     SQAMAALLRP ARWLLRAGRA ARLPLSLRLL AGCSGLPHAV PCLPAARSGP IAGGLLSQAR
     LYAIAAEKKN VLQEEPTLSP KRNARWFDWA LMRLDNSVRR TGRIPKMLLQ RVFDSTCHSG
     SPGSNQALLL LRSCGSLLPE LTLAERTEFA HQIWEKLQKL GTVYDVSHYN ALLKVYLQNE
     YKFSPTDFLA KMEEANIQPN RVTYQRLIAA YCNVGDIEGA SKILGFMKTK DLPVTEAVFS
     ALVTGHARAG DMENAENILT VMKEAGIEPG PDTYLALLNA YAEKGDIDRV KQTLEKVEKS
     DLYLMDRDLL QIIFSFSKAG YPQYVSEILE KITYERRYIP DAMNLILLLV TEKLEDTALQ
     ILLACPISKE DNLTDFGSFF LKHCVTVDTP VDKLIDYCKK LKEAQMHSSP LQFTLHCALV
     ANKTDLAKAL MKTLKEEGFP VRTHYFWPLL VGYQKKKNVQ GIIEVLKGMH EMGVVPDQET
     YINYVFPSFD NVQSVRAVLQ ENGCLPESDT FSLAEVRHEA LNGNLAYILS FLESNTTPFP
     FNYLRGSLIL GFRRSMDVNL WGKITELLYK DGRYCQEPPG PTEAVGYFLY NLIDSMSDSE
     VQAKEELLRQ YFHQLKEMNV KIPDNIYRGI RNLLDSYHVP ELIKDVNLLV EREKIDSQKT
     FQPASSDLES TLEKLKAQNQ PIGDVLKQLI LVLCSKENMQ KALELKAKYE SDMVLGGYAA
     LINLCCRHDN AEDALNLKQE FDRLDSSAVL DTNKYVGLVR VLGKHGKLQD AINILKEMKE
     KDVLIKDATV LSFFHILNGA ALRGEIETVK QLHEAIVTLG LAKPSTNISS PLVTVYLEKD
     NLAAALEVAM DCYRKYQILP RIHDILCKLI EKGETDLIQK AMDFVSQEQG EMTMLYDLFF
     AFLQTGNYKE AKKIIETPGI RARPARLQWF CERCISSNQV ETLEKLVELT QKLFECDRDQ
     MYYSLLKLYK INGNWQKADA VWNKMQEENV IPREKTLRLL ADILRNSNQE VPFDVPELWC
     EDEAGSLSSS SPSPLETDIQ KHVLKACQMK RNKDAYNIFL KAERQNIVFN SETYNSLIKL
     LLSNNGFIQA MQVKDFAETH IKGFTLNDAA NSLLIITQVR RDYLKEALRT LKAALDLGQT
     PSRLAVTRLI QAFALKGDVQ SIEAIQKMVH GLDSIGLSRM VFINNIALAQ IKNNNVDVVV
     ENIENMLTSG TPTVEPQFFG LAYLFRKVIE EQLDPAAEKL SIMAERLANQ FAVYKPVTDF
     FLQLVDAGKT DDARALLQRC GAIAEQTPIL LVFCIRSSQK PGKAPTLKSL LELIPELTEK
     EEAYTSAMKS YVLDKDVASA KALYEHLTAK KTKLNDLFLK RYAVLLKGAG ESVPFPEPPE
     SFEFYANQLK ESKEKPL
//
DBGET integrated database retrieval system