ID G2DFT5_9GAMM Unreviewed; 490 AA.
AC G2DFT5;
DT 16-NOV-2011, integrated into UniProtKB/TrEMBL.
DT 16-NOV-2011, sequence version 1.
DT 27-MAR-2024, entry version 52.
DE SubName: Full=DNA-binding regulatory protein for nitrogen fixation {ECO:0000313|EMBL:EGV50527.1};
GN Name=nifA {ECO:0000313|EMBL:EGV50527.1};
GN ORFNames=Rifp1Sym_cx00130 {ECO:0000313|EMBL:EGV50527.1};
OS endosymbiont of Riftia pachyptila (vent Ph05).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; sulfur-oxidizing symbionts.
OX NCBI_TaxID=1048808 {ECO:0000313|EMBL:EGV50527.1, ECO:0000313|Proteomes:UP000004491};
RN [1] {ECO:0000313|EMBL:EGV50527.1, ECO:0000313|Proteomes:UP000004491}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Gardebrecht A., Markert S., Felbeck H., Thuermer A., Albrecht D.,
RA Wollherr A., Kabisch J., Lehmann R., Daniel R., Liesegang H., Hecker M.,
RA Sievert S.M., Schweder T.;
RT "The endosymbionts of the deep-sea tubeworms Riftia pachyptila and Tevnia
RT jerichonana share an identical physiology as revealed by proteogenomic
RT analyses.";
RL ISME J. 0:0-0(2011).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EGV50527.1}.
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DR EMBL; AFOC01000077; EGV50527.1; -; Genomic_DNA.
DR RefSeq; WP_005964996.1; NZ_AFOC01000077.1.
DR AlphaFoldDB; G2DFT5; -.
DR PATRIC; fig|1048808.3.peg.2508; -.
DR Proteomes; UP000004491; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.40.50.2300; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR011006; CheY-like_superfamily.
DR InterPro; IPR010518; FleQ.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071:SF121; PTS-DEPENDENT DIHYDROXYACETONE KINASE OPERON REGULATORY PROTEIN-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF06490; FleQ; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF52172; CheY-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000313|EMBL:EGV50527.1};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 153..381
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 490 AA; 55014 MW; 6FBBE38B46DDFD66 CRC64;
MGQSAKRAGQ AFPKLCAYLI DDDEARREYL EHILSFLDAR LHRVKSYQDI KNHVEAEKEA
CSAVLVSPHY CQGEGREMIE ALEKQMPDLP VFQIFGEENP TSTEGCENVI GQLQIPTHYD
ELMALIHKAQ VFQESRRNGD HVTARSVELF RCLSGSSRAT HQINKMIDQV ADSEATVLIL
GESGTGKEVV ARKLHFHSKR RGKPFVPVNC GAIPADLLES ELFGHEKGAF TGAISSRQGR
FEMAEGGTLF LDEIGDMSMP MQVKLLRVLQ ERSFERVGSN KPIKSNVRIL AATHRNLEKA
IEDNSFREDL YYRLNVFPIE MPPLRARVED IPVLVTDLIR RIENEKRGSV RLTPAAVAAL
SHYRWPGNVR ELANLIERLA ILYPYGVVDV ADLPDKFRPV GNLVDTVQLP EVAIRGSEPD
TVVHAPRLPN EGIDLKAHLS TLEQSLIQQA LDESEGVVAH AAKRLHMRRT TLVEKLRKYG
LQRQTESTGI
//
