GenomeNet

Database: UniProt
Entry: G3U672_LOXAF
LinkDB: G3U672_LOXAF
Original site: G3U672_LOXAF 
ID   G3U672_LOXAF            Unreviewed;       888 AA.
AC   G3U672;
DT   16-NOV-2011, integrated into UniProtKB/TrEMBL.
DT   16-NOV-2011, sequence version 1.
DT   08-NOV-2023, entry version 59.
DE   SubName: Full=SLIT and NTRK like family member 3 {ECO:0000313|Ensembl:ENSLAFP00000023330.1};
GN   Name=SLITRK3 {ECO:0000313|Ensembl:ENSLAFP00000023330.1};
OS   Loxodonta africana (African elephant).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta.
OX   NCBI_TaxID=9785 {ECO:0000313|Ensembl:ENSLAFP00000023330.1, ECO:0000313|Proteomes:UP000007646};
RN   [1] {ECO:0000313|Ensembl:ENSLAFP00000023330.1, ECO:0000313|Proteomes:UP000007646}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Isolate ISIS603380 {ECO:0000313|Ensembl:ENSLAFP00000023330.1,
RC   ECO:0000313|Proteomes:UP000007646};
RA   Di Palma F., Heiman D., Young S., Johnson J., Lander E.S., Lindblad-Toh K.;
RT   "The Genome Sequence of Loxodonta africana (African elephant).";
RL   Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|Ensembl:ENSLAFP00000023330.1}
RP   IDENTIFICATION.
RC   STRAIN=Isolate ISIS603380 {ECO:0000313|Ensembl:ENSLAFP00000023330.1};
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
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DR   AlphaFoldDB; G3U672; -.
DR   STRING; 9785.ENSLAFP00000023330; -.
DR   Ensembl; ENSLAFT00000000382.4; ENSLAFP00000023330.1; ENSLAFG00000000382.4.
DR   eggNOG; ENOG502QYY5; Eukaryota.
DR   GeneTree; ENSGT00940000158681; -.
DR   HOGENOM; CLU_012706_0_0_1; -.
DR   InParanoid; G3U672; -.
DR   OMA; TLHKGRM; -.
DR   TreeFam; TF351826; -.
DR   Proteomes; UP000007646; Unassembled WGS sequence.
DR   GO; GO:0009986; C:cell surface; IEA:Ensembl.
DR   GO; GO:0098982; C:GABA-ergic synapse; IEA:Ensembl.
DR   GO; GO:0099634; C:postsynaptic specialization membrane; IEA:Ensembl.
DR   GO; GO:0007409; P:axonogenesis; IEA:Ensembl.
DR   GO; GO:0097116; P:gephyrin clustering involved in postsynaptic density assembly; IEA:Ensembl.
DR   GO; GO:0072578; P:neurotransmitter-gated ion channel clustering; IEA:Ensembl.
DR   GO; GO:0051965; P:positive regulation of synapse assembly; IEA:Ensembl.
DR   GO; GO:1905606; P:regulation of presynapse assembly; IEA:Ensembl.
DR   GO; GO:0099560; P:synaptic membrane adhesion; IEA:Ensembl.
DR   GO; GO:0051932; P:synaptic transmission, GABAergic; IEA:Ensembl.
DR   GO; GO:0072553; P:terminal button organization; IEA:Ensembl.
DR   Gene3D; 3.80.10.10; Ribonuclease Inhibitor; 2.
DR   InterPro; IPR000483; Cys-rich_flank_reg_C.
DR   InterPro; IPR001611; Leu-rich_rpt.
DR   InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
DR   InterPro; IPR032675; LRR_dom_sf.
DR   InterPro; IPR043326; Slitrk.
DR   PANTHER; PTHR45773:SF6; SLIT AND NTRK-LIKE PROTEIN 3; 1.
DR   PANTHER; PTHR45773; SLIT AND NTRK-LIKE PROTEIN 4-RELATED; 1.
DR   Pfam; PF13855; LRR_8; 2.
DR   SMART; SM00369; LRR_TYP; 9.
DR   SMART; SM00082; LRRCT; 2.
DR   SUPFAM; SSF52058; L domain-like; 2.
PE   4: Predicted;
KW   Leucine-rich repeat {ECO:0000256|ARBA:ARBA00022614};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007646};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Signal {ECO:0000256|ARBA:ARBA00022729};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        661..685
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          238..288
FT                   /note="LRRCT"
FT                   /evidence="ECO:0000259|SMART:SM00082"
FT   DOMAIN          568..618
FT                   /note="LRRCT"
FT                   /evidence="ECO:0000259|SMART:SM00082"
FT   REGION          331..366
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          626..645
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          760..779
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        343..366
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   888 AA;  100107 MW;  8AC17D9C7D3AFCF3 CRC64;
     VRMICPFPTS IAETLHRGRM LWIILLSTVA LGWTTPIPLI EDSEEIDEPC FDPCYCEVKE
     SLFHIHCDSK GFTNISQITE FWSRPFKLYL QRNSMRKLYT NSFLHLNNAV SINLGNNALQ
     DIQTGAFNGL KMLKRLYLHE NKLDVFRNDT FLGLESLEYL QADYNVIKRI ESGAFRNLSK
     LRVLILNDNL IPMLPTNLFK AVSLTHLDLR GNRLKVLFYR GMLDHIGRSL MELQLEENPW
     NCTCEIVQLK SWLERIPYTA LVGDITCETP FHFHGKDLRE IRKTELCPLL SDSEVEASLG
     IPHLSSSKEN AWPTKPSSML SSVHFTASSV EYKSSNKQPK PTKQPRTPRP PSTSQALYPG
     PNQPPIAPYQ TRPPIPIICP TGCTCNLHIN DLGLTVNCKE RGFNNISELL PRPLNAKKLY
     LSSNLIQKIY RSDFWNFSSL DLLHLGNNRI SYVQDGAFIN LPNLKSLFLN GNDIEKLTPG
     MFRGLQSLHY LYFEFNIIRE IQPAAFSLMP NLKLLFLNNN LLRTLPTDAF AGTSLARLNL
     RKNYFLYLPV AGVLEHLNAI VQIDLNENPW DCTCDLVPFK QWIETISSVS VVGDVLCGSP
     ENLTHRDVRT IELEVLCPEM LHAAPAGASP AQPADSHLAG GPTSASPYEF SPSGGPVPLS
     VLILSLLVLF FSAVFVAAGL FAYVLRRRRK KLPFRSKRQE GVDLTGIQMQ CHRLPTLSSP
     EKAPTVGHVY EYIPHPVTQM CNNPIYKPRE EEEVVISSVQ EPGGAERGGP GTQPPGMGEV
     LLGSEQFAET PKENHSNYRT LLEKEKEWTL AMSGSQLNTI VTVNHHHPHP HPHHPGGGDA
     RLKETLLFSA GKGFTDQQTQ KSDYLELRAK LQTKPDYLEV LEKTTYRF
//
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