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Database: UniProt
Entry: G7IA39_MEDTR
LinkDB: G7IA39_MEDTR
Original site: G7IA39_MEDTR 
ID   G7IA39_MEDTR            Unreviewed;       662 AA.
AC   G7IA39; A0A0C3ULG3;
DT   25-JAN-2012, integrated into UniProtKB/TrEMBL.
DT   01-OCT-2014, sequence version 2.
DT   24-JAN-2024, entry version 57.
DE   SubName: Full=PPR containing plant-like protein {ECO:0000313|EMBL:AES59950.2};
DE   SubName: Full=Putative tetratricopeptide-like helical domain-containing protein {ECO:0000313|EMBL:RHN78183.1};
GN   Name=11419828 {ECO:0000313|EnsemblPlants:AES59950};
GN   OrderedLocusNames=MTR_1g035250 {ECO:0000313|EMBL:AES59950.2};
GN   ORFNames=MtrunA17_Chr1g0162741 {ECO:0000313|EMBL:RHN78183.1};
OS   Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX   NCBI_TaxID=3880 {ECO:0000313|EMBL:AES59950.2, ECO:0000313|Proteomes:UP000002051};
RN   [1] {ECO:0000313|EMBL:AES59950.2, ECO:0000313|Proteomes:UP000002051}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=A17 {ECO:0000313|EMBL:AES59950.2}, and cv. Jemalong A17
RC   {ECO:0000313|EnsemblPlants:AES59950,
RC   ECO:0000313|Proteomes:UP000002051};
RX   PubMed=22089132; DOI=10.1038/nature10625;
RA   Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA   Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA   Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA   Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA   Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA   Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA   Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA   Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA   Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA   Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA   Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA   Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA   Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA   Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA   Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA   Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA   Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA   Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA   Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA   Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA   Town C.D., Roe B.A.;
RT   "The Medicago genome provides insight into the evolution of rhizobial
RT   symbioses.";
RL   Nature 480:520-524(2011).
RN   [2] {ECO:0000313|EMBL:AES59950.2, ECO:0000313|Proteomes:UP000002051}
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59950,
RC   ECO:0000313|Proteomes:UP000002051};
RX   PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA   Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA   Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA   Schwartz D.C., Town C.D.;
RT   "An improved genome release (version Mt4.0) for the model legume Medicago
RT   truncatula.";
RL   BMC Genomics 15:312-312(2014).
RN   [3] {ECO:0000313|EnsemblPlants:AES59950}
RP   IDENTIFICATION.
RC   STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES59950};
RG   EnsemblPlants;
RL   Submitted (APR-2015) to UniProtKB.
RN   [4] {ECO:0000313|Proteomes:UP000265566}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Jemalong A17 {ECO:0000313|Proteomes:UP000265566};
RX   PubMed=30397259; DOI=10.1038/s41477-018-0286-7;
RA   Pecrix Y., Staton S.E., Sallet E., Lelandais-Briere C., Moreau S.,
RA   Carrere S., Blein T., Jardinaud M.F., Latrasse D., Zouine M., Zahm M.,
RA   Kreplak J., Mayjonade B., Satge C., Perez M., Cauet S., Marande W.,
RA   Chantry-Darmon C., Lopez-Roques C., Bouchez O., Berard A., Debelle F.,
RA   Munos S., Bendahmane A., Berges H., Niebel A., Buitink J., Frugier F.,
RA   Benhamed M., Crespi M., Gouzy J., Gamas P.;
RT   "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL   Nat. Plants 4:1017-1025(2018).
RN   [5] {ECO:0000313|EMBL:RHN78183.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Leaves {ECO:0000313|EMBL:RHN78183.1};
RA   Pecrix Y., Gamas P., Carrere S.;
RT   "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL   Nat. Plants 0:0-0(2018).
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DR   EMBL; CM001217; AES59950.2; -; Genomic_DNA.
DR   EMBL; PSQE01000001; RHN78183.1; -; Genomic_DNA.
DR   RefSeq; XP_003589699.2; XM_003589651.2.
DR   AlphaFoldDB; G7IA39; -.
DR   STRING; 3880.G7IA39; -.
DR   PaxDb; 3880-AES59950; -.
DR   EnsemblPlants; AES59950; AES59950; MTR_1g035250.
DR   GeneID; 11419828; -.
DR   Gramene; AES59950; AES59950; MTR_1g035250.
DR   KEGG; mtr:11419828; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_12_1; -.
DR   OrthoDB; 1387526at2759; -.
DR   Proteomes; UP000002051; Chromosome 1.
DR   Proteomes; UP000265566; Chromosome 1.
DR   GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR   GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR   GO; GO:0000963; P:mitochondrial RNA processing; IBA:GO_Central.
DR   GO; GO:0008380; P:RNA splicing; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 8.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 13.
DR   PANTHER; PTHR47936:SF5; -; 1.
DR   PANTHER; PTHR47936; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF01535; PPR; 2.
DR   Pfam; PF12854; PPR_1; 2.
DR   Pfam; PF13041; PPR_2; 6.
DR   PROSITE; PS51375; PPR; 11.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          143..177
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          178..212
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          243..277
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          278..312
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          313..347
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          348..382
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          383..417
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          418..452
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          453..487
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          488..522
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          523..557
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   662 AA;  74612 MW;  C929A4D75912C61F CRC64;
     MNLRNGCSLL LKPRKSPTPF VLATNPNPEK ANSLNVCPVS ESHVVKVLRQ EHDIVSSLEY
     FKSLSNSGTF KHTHLTYETM IDKLGRNNEM DGVSYLLQQM KLENVPCSQE LFQFVIKCYR
     RSNLGEQGLK MFYRIREFGC EPSVKIYNLV LDALLSQNLF KMINALYNNM KSEGLEPNVF
     TYNVLLKALC QNGKVDGACK LLVEMSNKGC DPDDVSYTTV ISSMCKLGDV DKARELAMKF
     EPVVPVYNAL IHGVCKECRF KEAFDLMNEM VDRGVDPNVI SYSTVISCLS DMGNVELSLA
     VFGRMFVRGC RPNVQTFTSL IKGFFVRGRV GDAVGLWNLM IREGVSPNVV AYNTLIHGLC
     SDGNMDEAIS VWNQMEKDSI RPNVTTYSTI IYGFAKSGDL VSACETWNKM INCGCRPNVV
     VYTCMVDVLC QMSMFDQAFD LIDNMISDGC PPTVITFNNF IKGLCRAGRV EWAMNVLDQM
     EKYECLPNIR TYNELLDGLF RANAFREACG LIRELEERKV EFDCVTYNTI MYGFSFNGMH
     QQVLQLLGKM LVNGIKLDTI TVNTTVNAYC KLGKVKTAIK VLDNISAEKE FRADIITHTI
     ILWGICNWLG TEEAVVYLHE MLKRGIFPNI ATWNVLVRGF FSKLGHMGPI RILDDIIGSS
     IM
//
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