ID G7K4B9_MEDTR Unreviewed; 754 AA.
AC G7K4B9;
DT 25-JAN-2012, integrated into UniProtKB/TrEMBL.
DT 25-JAN-2012, sequence version 1.
DT 27-MAR-2024, entry version 71.
DE RecName: Full=glycerophosphodiester phosphodiesterase {ECO:0000256|ARBA:ARBA00012247};
DE EC=3.1.4.46 {ECO:0000256|ARBA:ARBA00012247};
GN Name=11436650 {ECO:0000313|EnsemblPlants:AET00635};
GN OrderedLocusNames=MTR_5g094230 {ECO:0000313|EMBL:AET00635.1};
GN ORFNames=MtrunA17_Chr5g0445151 {ECO:0000313|EMBL:RHN57878.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:AET00635.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:AET00635.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:AET00635.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:AET00635,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:AET00635.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AET00635,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:AET00635}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AET00635};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [4] {ECO:0000313|EMBL:RHN57878.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN57878.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a sn-glycero-3-phosphodiester + H2O = an alcohol + H(+) + sn-
CC glycerol 3-phosphate; Xref=Rhea:RHEA:12969, ChEBI:CHEBI:15377,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:30879, ChEBI:CHEBI:57597,
CC ChEBI:CHEBI:83408; EC=3.1.4.46;
CC Evidence={ECO:0000256|ARBA:ARBA00029315};
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DR EMBL; CM001221; AET00635.1; -; Genomic_DNA.
DR EMBL; PSQE01000005; RHN57878.1; -; Genomic_DNA.
DR RefSeq; XP_003617676.1; XM_003617628.2.
DR AlphaFoldDB; G7K4B9; -.
DR STRING; 3880.G7K4B9; -.
DR PaxDb; 3880-AET00635; -.
DR ProMEX; G7K4B9; -.
DR EnsemblPlants; AET00635; AET00635; MTR_5g094230.
DR GeneID; 11436650; -.
DR Gramene; AET00635; AET00635; MTR_5g094230.
DR KEGG; mtr:11436650; -.
DR eggNOG; KOG2258; Eukaryota.
DR OMA; LLAMYYC; -.
DR OrthoDB; 1200549at2759; -.
DR Proteomes; UP000002051; Chromosome 5.
DR Proteomes; UP000265566; Chromosome 5.
DR GO; GO:0008889; F:glycerophosphodiester phosphodiesterase activity; IBA:GO_Central.
DR GO; GO:0006071; P:glycerol metabolic process; IEA:UniProtKB-KW.
DR GO; GO:0006629; P:lipid metabolic process; IEA:InterPro.
DR CDD; cd08603; GDPD_SHV3_repeat_1; 1.
DR CDD; cd08604; GDPD_SHV3_repeat_2; 1.
DR Gene3D; 3.20.20.190; Phosphatidylinositol (PI) phosphodiesterase; 2.
DR InterPro; IPR030395; GP_PDE_dom.
DR InterPro; IPR017946; PLC-like_Pdiesterase_TIM-brl.
DR PANTHER; PTHR43620:SF32; GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3; 1.
DR PANTHER; PTHR43620; GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE; 1.
DR Pfam; PF03009; GDPD; 2.
DR SUPFAM; SSF51695; PLC-like phosphodiesterases; 2.
DR PROSITE; PS51704; GP_PDE; 2.
PE 4: Predicted;
KW Glycerol metabolism {ECO:0000256|ARBA:ARBA00022798};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000313|EMBL:RHN57878.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..22
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 23..754
FT /note="glycerophosphodiester phosphodiesterase"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5014573341"
FT DOMAIN 37..339
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
FT DOMAIN 355..656
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
SQ SEQUENCE 754 AA; 81378 MW; D1F2AB644582BDB3 CRC64;
MCSPRALSVS LSLFLLLALV SAQTKRSVWN TLTGSPPLVI SHGGFSGIFP DSSDSAYILA
AATSTPNAAL WCDVQLTKDA VGICLPNLNL LNSTNIFGVF PNKTTSYLVN GESTAGYFSV
DYSFEDLSTV TVTQGVFSRS PLLDGNNFII NTVDEVLKLV APQTPGLWLN IQHDAFYSQH
NLSMRSFVLA VSRRLHVSYI SSPEAGFLRS ITKRFNPKTT KLVFRFLNQE DTDPSTNQTY
GSFLKNLTFI KTFASGILVP KGYIWPVDAS LYLQPHTSLV SDAHKAGLEV FAADFSNDIV
ISYNYSFDPL AESLQFIDNG EFTVDGVLTD FPLTPSAAID CFAHIGNNAT RRDKTLIISK
YGASGDFPAC TNLAYNKAIQ DGVDVLDCPV QLSKDGTPFC LKSIDLLEST TVAQTSFSDL
AMSVPEIKSG RGIFSFNLTW SDIKGLTPSI LAPFSKYTLF RNPKAKNAGT FLTLSDFLSL
TKNQTSLSGV LIIVENAAYL AEKQGLSVTD VVIKALSNAG YDKPGSQKVY IQSTNSSVLL
KFKEKTKYEL VYQIDESVGD ATNAAAEDIK TFASSVVINK NSVYPQNAGY VTTKTNIVEK
LQASKLSVFV ETFSNEFVSQ AFDFFSDSTV EINSFIQGAG INGVITDFPK TAHRYSRNKC
LNLGNSTPPY MQPVEAGSLF GVISNTSLPP AMAPLPPLTK DEVVEPPLPP VAKIAPAASP
AAGTKSPPGN AQPKVSACFF LSSLAVFVAS ILLL
//
