ID G9M6X6_CARBL Unreviewed; 250 AA.
AC G9M6X6;
DT 22-FEB-2012, integrated into UniProtKB/TrEMBL.
DT 22-FEB-2012, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE SubName: Full=PHYA protein {ECO:0000313|EMBL:BAL41902.1};
DE Flags: Fragment;
GN Name=PHYA {ECO:0000313|EMBL:BAL41902.1};
OS Cardamine bellidifolia (Alpine bitter-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Cardamineae; Cardamine.
OX NCBI_TaxID=109591 {ECO:0000313|EMBL:BAL41902.1};
RN [1] {ECO:0000313|EMBL:BAL41902.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Jasper {ECO:0000313|EMBL:BAL41913.1}, TC07_10
RC {ECO:0000313|EMBL:BAL41901.1}, TC07_12 {ECO:0000313|EMBL:BAL41902.1},
RC TC07_14 {ECO:0000313|EMBL:BAL41903.1}, TC07_21
RC {ECO:0000313|EMBL:BAL41904.1}, TC07_23 {ECO:0000313|EMBL:BAL41905.1},
RC TC07_24 {ECO:0000313|EMBL:BAL41906.1}, TC07_25
RC {ECO:0000313|EMBL:BAL41907.1}, TC07_26 {ECO:0000313|EMBL:BAL41908.1},
RC TC07_27 {ECO:0000313|EMBL:BAL41909.1}, TC07_28
RC {ECO:0000313|EMBL:BAL41910.1}, TC07_30 {ECO:0000313|EMBL:BAL41911.1},
RC TC07_5 {ECO:0000313|EMBL:BAL41896.1}, TC07_6
RC {ECO:0000313|EMBL:BAL41897.1}, TC07_7 {ECO:0000313|EMBL:BAL41898.1},
RC TC07_8 {ECO:0000313|EMBL:BAL41899.1}, and TC07_9
RC {ECO:0000313|EMBL:BAL41900.1};
RX PubMed=22329701;
RA Ikeda H., Carlsen T., Fujii N., Brochmann C., Setoguchi H.;
RT "Pleistocene climatic oscillations and the speciation history of an alpine
RT endemic and a widespread arctic-alpine plant.";
RL New Phytol. 194:583-594(2012).
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
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DR EMBL; AB607453; BAL41896.1; -; Genomic_DNA.
DR EMBL; AB607454; BAL41897.1; -; Genomic_DNA.
DR EMBL; AB607455; BAL41898.1; -; Genomic_DNA.
DR EMBL; AB607456; BAL41899.1; -; Genomic_DNA.
DR EMBL; AB607457; BAL41900.1; -; Genomic_DNA.
DR EMBL; AB607458; BAL41901.1; -; Genomic_DNA.
DR EMBL; AB607459; BAL41902.1; -; Genomic_DNA.
DR EMBL; AB607460; BAL41903.1; -; Genomic_DNA.
DR EMBL; AB607461; BAL41904.1; -; Genomic_DNA.
DR EMBL; AB607462; BAL41905.1; -; Genomic_DNA.
DR EMBL; AB607463; BAL41906.1; -; Genomic_DNA.
DR EMBL; AB607464; BAL41907.1; -; Genomic_DNA.
DR EMBL; AB607465; BAL41908.1; -; Genomic_DNA.
DR EMBL; AB607466; BAL41909.1; -; Genomic_DNA.
DR EMBL; AB607467; BAL41910.1; -; Genomic_DNA.
DR EMBL; AB607468; BAL41911.1; -; Genomic_DNA.
DR EMBL; AB607469; BAL41912.1; -; Genomic_DNA.
DR EMBL; AB607470; BAL41913.1; -; Genomic_DNA.
DR AlphaFoldDB; G9M6X6; -.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR GO; GO:0007165; P:signal transduction; IEA:UniProt.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 1..109
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:BAL41902.1"
FT NON_TER 250
FT /evidence="ECO:0000313|EMBL:BAL41902.1"
SQ SEQUENCE 250 AA; 27960 MW; 4105F5A8EE649EDF CRC64;
KNKVRMIVDC NAKHARVLQD KKLSFDLTLC GSTLRAPHSC HLQYMANMDS IASLVMAVVV
NEEDGEGDAP DSTTQPQKRK RLWGLVVCHN TTPRFVPFPL RYACEFLAQV FAIHVNKEVE
LENQIVEKNI LRTQTLLCDM LMRDAPLGIV SQSPNIMDLV KCDGAALLYK DKIWKLGTTP
SEFHLQEIAS WLCEYHTDST GLSTDSLHDA GFPKALALGD SVCGMAAVRI SLKDVIFWFR
SHTAGEVRWG
//
