ID G9NDI5_HYPVG Unreviewed; 962 AA.
AC G9NDI5;
DT 22-FEB-2012, integrated into UniProtKB/TrEMBL.
DT 22-FEB-2012, sequence version 1.
DT 24-JAN-2024, entry version 49.
DE RecName: Full=Small-subunit processome Utp12 domain-containing protein {ECO:0000259|Pfam:PF04003};
GN ORFNames=TRIVIDRAFT_56214 {ECO:0000313|EMBL:EHK15752.1};
OS Hypocrea virens (strain Gv29-8 / FGSC 10586) (Gliocladium virens)
OS (Trichoderma virens).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes;
OC Hypocreomycetidae; Hypocreales; Hypocreaceae; Trichoderma.
OX NCBI_TaxID=413071 {ECO:0000313|EMBL:EHK15752.1, ECO:0000313|Proteomes:UP000007115};
RN [1] {ECO:0000313|EMBL:EHK15752.1, ECO:0000313|Proteomes:UP000007115}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Gv29-8 / FGSC 10586 {ECO:0000313|Proteomes:UP000007115};
RX PubMed=21501500; DOI=10.1186/gb-2011-12-4-r40;
RA Kubicek C.P., Herrera-Estrella A., Seidl-Seiboth V., Martinez D.A.,
RA Druzhinina I.S., Thon M., Zeilinger S., Casas-Flores S., Horwitz B.A.,
RA Mukherjee P.K., Mukherjee M., Kredics L., Alcaraz L.D., Aerts A., Antal Z.,
RA Atanasova L., Cervantes-Badillo M.G., Challacombe J., Chertkov O.,
RA McCluskey K., Coulpier F., Deshpande N., von Doehren H., Ebbole D.J.,
RA Esquivel-Naranjo E.U., Fekete E., Flipphi M., Glaser F.,
RA Gomez-Rodriguez E.Y., Gruber S., Han C., Henrissat B., Hermosa R.,
RA Hernandez-Onate M., Karaffa L., Kosti I., Le Crom S., Lindquist E.,
RA Lucas S., Luebeck M., Luebeck P.S., Margeot A., Metz B., Misra M.,
RA Nevalainen H., Omann M., Packer N., Perrone G., Uresti-Rivera E.E.,
RA Salamov A., Schmoll M., Seiboth B., Shapiro H., Sukno S.,
RA Tamayo-Ramos J.A., Tisch D., Wiest A., Wilkinson H.H., Zhang M.,
RA Coutinho P.M., Kenerley C.M., Monte E., Baker S.E., Grigoriev I.V.;
RT "Comparative genome sequence analysis underscores mycoparasitism as the
RT ancestral life style of Trichoderma.";
RL Genome Biol. 12:R40.1-R40.15(2011).
CC -!- SIMILARITY: Belongs to the WD repeat WDR3/UTP12 family.
CC {ECO:0000256|ARBA:ARBA00038229}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EHK15752.1}.
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DR EMBL; ABDF02000092; EHK15752.1; -; Genomic_DNA.
DR RefSeq; XP_013949945.1; XM_014094470.1.
DR AlphaFoldDB; G9NDI5; -.
DR STRING; 413071.G9NDI5; -.
DR EnsemblFungi; EHK15752; EHK15752; TRIVIDRAFT_56214.
DR GeneID; 25795600; -.
DR VEuPathDB; FungiDB:TRIVIDRAFT_56214; -.
DR eggNOG; KOG0306; Eukaryota.
DR HOGENOM; CLU_005318_0_1_1; -.
DR InParanoid; G9NDI5; -.
DR OMA; MQCLRTV; -.
DR OrthoDB; 168440at2759; -.
DR Proteomes; UP000007115; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0034388; C:Pwp2p-containing subcomplex of 90S preribosome; IEA:EnsemblFungi.
DR GO; GO:0032040; C:small-subunit processome; IEA:EnsemblFungi.
DR GO; GO:0034511; F:U3 snoRNA binding; IEA:EnsemblFungi.
DR GO; GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IEA:EnsemblFungi.
DR GO; GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IEA:EnsemblFungi.
DR GO; GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IEA:EnsemblFungi.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 5.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR007148; SSU_processome_Utp12.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR19853; WD REPEAT CONTAINING PROTEIN 3 WDR3; 1.
DR PANTHER; PTHR19853:SF0; WD REPEAT-CONTAINING PROTEIN 3; 1.
DR Pfam; PF04003; Utp12; 1.
DR Pfam; PF00400; WD40; 8.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 12.
DR SUPFAM; SSF117289; Nucleoporin domain; 1.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 3.
DR PROSITE; PS50082; WD_REPEATS_2; 8.
DR PROSITE; PS50294; WD_REPEATS_REGION; 5.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000007115};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT TRANSMEM 846..866
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT REPEAT 106..139
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 187..210
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 273..314
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 423..463
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 504..538
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 603..644
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 645..691
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 692..724
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT DOMAIN 827..927
FT /note="Small-subunit processome Utp12"
FT /evidence="ECO:0000259|Pfam:PF04003"
FT REGION 315..345
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 962 AA; 107391 MW; 2A9B2418724DDFA1 CRC64;
MVKSYLKYEH AKSFGTILSS SSNLVWTSKD RTGTGAGQAI TAANEEVLCW DIKKGELTGR
WRDERCSYPV TAIAQSGVDK DMFAVGYEDG SIRIWDSKIA TVLVNFNGHK SAITHLVFDK
SGVRLASGSK DTDIIVWDLV AEVGQFKLRG HKDQITGLRF LEPEPKVSDE DGNKAMILNG
EDAADGFLLS TGKDSLLKLW DLSSRHCIET HISQTNGECW ALGVSPDLSG CITAGNDGEM
KVWSLDTDGL SSTAQRVEVN ASAQFLQDRG TLFRQNKDRA TEVIFHPQRD YFAVHGSDKS
VDIWRIRSES EVKKGLARKR RRRREKQKDA KNDDEDMENG DDAQDDVSKA DISDVFVQYV
ILRTGGKVRS IDWALPAGQK QIHLVVGTTN NQLEYYNVQP KEKSDKKSKD DIPDYTKAFS
VEIPGHRADI RALSLSSDDK MLASASNGLL KIWNIKTQTC IRTFECGYAL CCAFLPGDKV
VVVGTKNGEL QLFDVASASL LDSVEAHEGA IWALQVHPDG RSVVSGSADK SAKFWDFKIV
QEQVLGTKRT TPKLKLVQSR TLKVSDDILS LRFSPDAKLL AVSLLDSTVK VFFVDSLKLY
LNLYGHKLPV LSMDISYDSK LIVTSSADKN IRIWGLDFGD CHKALFGHQD SILQVAFVPH
NSDGNGHHFF SSGKDRTIRY WDGDKFEQIQ RLDGHHGEVW SIAMSHSGNF LVTASHDKSI
RVWDETDEQI FLEEEREKEM EELYESTLTA SLEKDPEGGD ENGEVAAAGK QTTETLMAGE
RIAEALEMGM ADLNLLKEYE EAKLTNPHAM PPQRNPVFLA LGNITAEAYV MSVLQRIKAS
ALHDALLVLP FASVPILFTF INIFAMRSMN IPLTCRILFF MLKTHHKQIV ASRTMKVMMD
GIRTNLRAAL KKQKDEMGVN IAALKVVGMQ IREKSVKEYV DETWEEESRE RSAKKRAFVH
VA
//