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Database: UniProt
Entry: H0USC1_9BACT
LinkDB: H0USC1_9BACT
Original site: H0USC1_9BACT 
ID   H0USC1_9BACT            Unreviewed;       393 AA.
AC   H0USC1;
DT   22-FEB-2012, integrated into UniProtKB/TrEMBL.
DT   22-FEB-2012, sequence version 1.
DT   24-JAN-2024, entry version 42.
DE   SubName: Full=DNA-directed RNA polymerase specialized sigma subunit, sigma24 {ECO:0000313|EMBL:EHM10210.1};
GN   ORFNames=TheveDRAFT_1086 {ECO:0000313|EMBL:EHM10210.1};
OS   Thermanaerovibrio velox DSM 12556.
OC   Bacteria; Synergistota; Synergistia; Synergistales; Synergistaceae;
OC   Thermanaerovibrio.
OX   NCBI_TaxID=926567 {ECO:0000313|EMBL:EHM10210.1};
RN   [1] {ECO:0000313|EMBL:EHM10210.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 12556 {ECO:0000313|EMBL:EHM10210.1};
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA   Bruce D., Goodwin L., Pitluck S., Peters L., Mikhailova N., Teshima H.,
RA   Kyrpides N., Mavromatis K., Ivanova N., Markowitz V., Cheng J.-F.,
RA   Hugenholtz P., Woyke T., Wu D., Spring S., Brambilla E.-M., Klenk H.-P.,
RA   Eisen J.A.;
RT   "The Noncontiguous Finished genome of Thermanaerovibrio velox DSM 12556.";
RL   Submitted (OCT-2011) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|ARBA:ARBA00008798}.
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DR   EMBL; CM001377; EHM10210.1; -; Genomic_DNA.
DR   RefSeq; WP_006583704.1; NZ_CM001377.1.
DR   AlphaFoldDB; H0USC1; -.
DR   STRING; 926567.TheveDRAFT_1086; -.
DR   eggNOG; COG1508; Bacteria.
DR   HOGENOM; CLU_673767_0_0_0; -.
DR   OrthoDB; 3527at2; -.
DR   Proteomes; UP000005730; Chromosome.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS50044; SIGMA54_3; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW   ECO:0000313|EMBL:EHM10210.1};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          100..243
FT                   /note="RNA polymerase sigma factor 54 core-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04963"
FT   DOMAIN          252..378
FT                   /note="RNA polymerase sigma factor 54 DNA-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04552"
SQ   SEQUENCE   393 AA;  44304 MW;  754A352E62146DC4 CRC64;
     MAFLEVILSN TPNVALGVKP YLLNGKNWLF ISPDELAEEL HKACEDLPSV SIKRPGGRLE
     LPLDENPWEE ESDDIREIEF QLSLIKDLPQ GTTPADWVSL LGPRGYLNGS TEECATSLGI
     SQVQFLKTLK EIQDQLDPPG VFAQDLRDCL LIQLRRLSMD NSDGARLLKD FHRELESSRL
     DLISKATGWD LNRVKEAIMS LRKLDPSPLG IVSKPVRPEI SMIPYKDGIS FKILRENMPS
     LSLTYPSKIK GKLRSILMRM SGRYRTLATI GLAITMTQRN FLSGKTEYLE PLTVKDLARI
     TNLSPSTVSR CTRGTYAVTR YGTISLSRLL SKPLRSNPNL SIHRLTLEIS KLKSMGLSDL
     EISKRLGVPR RTLAYHRERR DFTYPKPSLA SLE
//
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