ID H0UX11_CAVPO Unreviewed; 705 AA.
AC H0UX11;
DT 22-FEB-2012, integrated into UniProtKB/TrEMBL.
DT 22-FEB-2012, sequence version 1.
DT 24-JAN-2024, entry version 53.
DE SubName: Full=Pentatricopeptide repeat domain 1 {ECO:0000313|Ensembl:ENSCPOP00000001611.2};
GN Name=PTCD1 {ECO:0000313|Ensembl:ENSCPOP00000001611.2};
OS Cavia porcellus (Guinea pig).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae;
OC Cavia.
OX NCBI_TaxID=10141 {ECO:0000313|Ensembl:ENSCPOP00000001611.2, ECO:0000313|Proteomes:UP000005447};
RN [1] {ECO:0000313|Proteomes:UP000005447}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=2N {ECO:0000313|Proteomes:UP000005447};
RX PubMed=21993624; DOI=10.1038/nature10530;
RA Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S.,
RA Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B.,
RA Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.,
RA Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M.,
RA Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M.,
RA Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D.,
RA Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J.,
RA Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S.,
RA Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A.,
RA Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R.,
RA Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R.,
RA Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C.,
RA Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E.,
RA Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N.,
RA Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.;
RT "A high-resolution map of human evolutionary constraint using 29 mammals.";
RL Nature 478:476-482(2011).
RN [2] {ECO:0000313|Ensembl:ENSCPOP00000001611.2}
RP IDENTIFICATION.
RC STRAIN=2N {ECO:0000313|Ensembl:ENSCPOP00000001611.2};
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
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DR EMBL; AAKN02032145; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_005003762.1; XM_005003705.2.
DR AlphaFoldDB; H0UX11; -.
DR STRING; 10141.ENSCPOP00000001611; -.
DR Ensembl; ENSCPOT00000001801.3; ENSCPOP00000001611.2; ENSCPOG00000001780.4.
DR GeneID; 100713838; -.
DR KEGG; cpoc:100713838; -.
DR VEuPathDB; HostDB:ENSCPOG00000001780; -.
DR eggNOG; KOG4197; Eukaryota.
DR GeneTree; ENSGT00940000153974; -.
DR HOGENOM; CLU_021952_0_0_1; -.
DR InParanoid; H0UX11; -.
DR OMA; YALQVWQ; -.
DR OrthoDB; 1025498at2759; -.
DR TreeFam; TF324792; -.
DR Proteomes; UP000005447; Unassembled WGS sequence.
DR Bgee; ENSCPOG00000001780; Expressed in heart left ventricle and 12 other cell types or tissues.
DR GO; GO:0005739; C:mitochondrion; IEA:Ensembl.
DR GO; GO:0000049; F:tRNA binding; IEA:Ensembl.
DR GO; GO:0032543; P:mitochondrial translation; IEA:Ensembl.
DR GO; GO:0042780; P:tRNA 3'-end processing; IEA:Ensembl.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 1.
DR PANTHER; PTHR24014; 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2; 1.
DR PANTHER; PTHR24014:SF6; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL; 1.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 1.
DR PROSITE; PS51375; PPR; 3.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000005447}.
FT REPEAT 176..210
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 285..321
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 524..558
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 59..93
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 404..429
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 683..705
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 59..79
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 687..705
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 705 AA; 79482 MW; 5CE6E586B11A890D CRC64;
MDLVRLARLF SSPCPVRLSI LQHLNPLGAQ WAGGREWLAM WQTWPVSAFS SFSCQLPPGQ
GNQKNMSSLP SNPSQPSSMD PQEEEEEESF GTLSNKYSSR RLFRKSTAQL YNLQLREQNA
EEDEEGKLEP KSWQGRKNTP YWYFFQCKRL IKEGKLAEAL ELFERQMLKE ERLQPLECNY
TVLIGGCGRA GYLKKAFRLY NDMKKRDLEP SDATYTALFN VCAESPWKDS ALQSALKLQQ
QLRAKNFQLN LKTYHALLKV AAKCADLRMC LDVFKEIVYK GHVVTEETFN FLLMGCIQDK
KTGFRHALQV WRQMLSLGIK PNRHGYNLLL GAARDCGLGD PEVASRLLLR SSEEMVLLPH
QEGKQRAGKR DPPRAGGGTS ARLLVEALER QLCMELSPAL EVPPEPLKST VSDKAQPEVE
TNKETSHTAA LTLRPPKPLP LELEVNLLAL GAVSPAVVSL GAVTTPADRL VLMGGLEGFL
GKMAEHGLRP NIKTLTLLAE VVEPGSPAES SLLTILDRHQ VEADVTFFNT LMRKKSKLGD
LEGAKALLPV LAKRGLIPNL HTFCNLAIGC HRHTDGLQLL ADMKKSHMIP NTYIYSTLIN
AALKKLDYSY LIDILKDMKH SRVPVNEVVI RQLEFAAEYP PTFDRYQGKN TYLEKIDGFR
AYYKQWLKVM PAEETTHPWQ VFRTKPKGDQ DTARDIGTDR SFEGR
//