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Database: UniProt
Entry: H0UX11_CAVPO
LinkDB: H0UX11_CAVPO
Original site: H0UX11_CAVPO 
ID   H0UX11_CAVPO            Unreviewed;       705 AA.
AC   H0UX11;
DT   22-FEB-2012, integrated into UniProtKB/TrEMBL.
DT   22-FEB-2012, sequence version 1.
DT   24-JAN-2024, entry version 53.
DE   SubName: Full=Pentatricopeptide repeat domain 1 {ECO:0000313|Ensembl:ENSCPOP00000001611.2};
GN   Name=PTCD1 {ECO:0000313|Ensembl:ENSCPOP00000001611.2};
OS   Cavia porcellus (Guinea pig).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae;
OC   Cavia.
OX   NCBI_TaxID=10141 {ECO:0000313|Ensembl:ENSCPOP00000001611.2, ECO:0000313|Proteomes:UP000005447};
RN   [1] {ECO:0000313|Proteomes:UP000005447}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=2N {ECO:0000313|Proteomes:UP000005447};
RX   PubMed=21993624; DOI=10.1038/nature10530;
RA   Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J., Washietl S.,
RA   Kheradpour P., Ernst J., Jordan G., Mauceli E., Ward L.D., Lowe C.B.,
RA   Holloway A.K., Clamp M., Gnerre S., Alfoldi J., Beal K., Chang J.,
RA   Clawson H., Cuff J., Di Palma F., Fitzgerald S., Flicek P., Guttman M.,
RA   Hubisz M.J., Jaffe D.B., Jungreis I., Kent W.J., Kostka D., Lara M.,
RA   Martins A.L., Massingham T., Moltke I., Raney B.J., Rasmussen M.D.,
RA   Robinson J., Stark A., Vilella A.J., Wen J., Xie X., Zody M.C., Baldwin J.,
RA   Bloom T., Chin C.W., Heiman D., Nicol R., Nusbaum C., Young S.,
RA   Wilkinson J., Worley K.C., Kovar C.L., Muzny D.M., Gibbs R.A., Cree A.,
RA   Dihn H.H., Fowler G., Jhangiani S., Joshi V., Lee S., Lewis L.R.,
RA   Nazareth L.V., Okwuonu G., Santibanez J., Warren W.C., Mardis E.R.,
RA   Weinstock G.M., Wilson R.K., Delehaunty K., Dooling D., Fronik C.,
RA   Fulton L., Fulton B., Graves T., Minx P., Sodergren E., Birney E.,
RA   Margulies E.H., Herrero J., Green E.D., Haussler D., Siepel A., Goldman N.,
RA   Pollard K.S., Pedersen J.S., Lander E.S., Kellis M.;
RT   "A high-resolution map of human evolutionary constraint using 29 mammals.";
RL   Nature 478:476-482(2011).
RN   [2] {ECO:0000313|Ensembl:ENSCPOP00000001611.2}
RP   IDENTIFICATION.
RC   STRAIN=2N {ECO:0000313|Ensembl:ENSCPOP00000001611.2};
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
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DR   EMBL; AAKN02032145; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; XP_005003762.1; XM_005003705.2.
DR   AlphaFoldDB; H0UX11; -.
DR   STRING; 10141.ENSCPOP00000001611; -.
DR   Ensembl; ENSCPOT00000001801.3; ENSCPOP00000001611.2; ENSCPOG00000001780.4.
DR   GeneID; 100713838; -.
DR   KEGG; cpoc:100713838; -.
DR   VEuPathDB; HostDB:ENSCPOG00000001780; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   GeneTree; ENSGT00940000153974; -.
DR   HOGENOM; CLU_021952_0_0_1; -.
DR   InParanoid; H0UX11; -.
DR   OMA; YALQVWQ; -.
DR   OrthoDB; 1025498at2759; -.
DR   TreeFam; TF324792; -.
DR   Proteomes; UP000005447; Unassembled WGS sequence.
DR   Bgee; ENSCPOG00000001780; Expressed in heart left ventricle and 12 other cell types or tissues.
DR   GO; GO:0005739; C:mitochondrion; IEA:Ensembl.
DR   GO; GO:0000049; F:tRNA binding; IEA:Ensembl.
DR   GO; GO:0032543; P:mitochondrial translation; IEA:Ensembl.
DR   GO; GO:0042780; P:tRNA 3'-end processing; IEA:Ensembl.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 1.
DR   PANTHER; PTHR24014; 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2; 1.
DR   PANTHER; PTHR24014:SF6; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL; 1.
DR   Pfam; PF13041; PPR_2; 1.
DR   Pfam; PF13812; PPR_3; 1.
DR   PROSITE; PS51375; PPR; 3.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000005447}.
FT   REPEAT          176..210
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          285..321
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          524..558
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REGION          59..93
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          404..429
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          683..705
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        59..79
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        687..705
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   705 AA;  79482 MW;  5CE6E586B11A890D CRC64;
     MDLVRLARLF SSPCPVRLSI LQHLNPLGAQ WAGGREWLAM WQTWPVSAFS SFSCQLPPGQ
     GNQKNMSSLP SNPSQPSSMD PQEEEEEESF GTLSNKYSSR RLFRKSTAQL YNLQLREQNA
     EEDEEGKLEP KSWQGRKNTP YWYFFQCKRL IKEGKLAEAL ELFERQMLKE ERLQPLECNY
     TVLIGGCGRA GYLKKAFRLY NDMKKRDLEP SDATYTALFN VCAESPWKDS ALQSALKLQQ
     QLRAKNFQLN LKTYHALLKV AAKCADLRMC LDVFKEIVYK GHVVTEETFN FLLMGCIQDK
     KTGFRHALQV WRQMLSLGIK PNRHGYNLLL GAARDCGLGD PEVASRLLLR SSEEMVLLPH
     QEGKQRAGKR DPPRAGGGTS ARLLVEALER QLCMELSPAL EVPPEPLKST VSDKAQPEVE
     TNKETSHTAA LTLRPPKPLP LELEVNLLAL GAVSPAVVSL GAVTTPADRL VLMGGLEGFL
     GKMAEHGLRP NIKTLTLLAE VVEPGSPAES SLLTILDRHQ VEADVTFFNT LMRKKSKLGD
     LEGAKALLPV LAKRGLIPNL HTFCNLAIGC HRHTDGLQLL ADMKKSHMIP NTYIYSTLIN
     AALKKLDYSY LIDILKDMKH SRVPVNEVVI RQLEFAAEYP PTFDRYQGKN TYLEKIDGFR
     AYYKQWLKVM PAEETTHPWQ VFRTKPKGDQ DTARDIGTDR SFEGR
//
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