ID H2N1F6_ORYLA Unreviewed; 683 AA.
AC H2N1F6;
DT 21-MAR-2012, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 2.
DT 24-JAN-2024, entry version 60.
DE SubName: Full=Interacts with SUPT6H, CTD assembly factor 1 {ECO:0000313|Ensembl:ENSORLP00000025259.2};
GN Name=IWS1 {ECO:0000313|Ensembl:ENSORLP00000025259.2};
OS Oryzias latipes (Japanese rice fish) (Japanese killifish).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae;
OC Oryzias.
OX NCBI_TaxID=8090 {ECO:0000313|Ensembl:ENSORLP00000025259.2, ECO:0000313|Proteomes:UP000001038};
RN [1] {ECO:0000313|Ensembl:ENSORLP00000025259.2, ECO:0000313|Proteomes:UP000001038}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Hd-rR {ECO:0000313|Ensembl:ENSORLP00000025259.2,
RC ECO:0000313|Proteomes:UP000001038};
RX PubMed=17554307; DOI=10.1038/nature05846;
RA Kasahara M., Naruse K., Sasaki S., Nakatani Y., Qu W., Ahsan B., Yamada T.,
RA Nagayasu Y., Doi K., Kasai Y., Jindo T., Kobayashi D., Shimada A.,
RA Toyoda A., Kuroki Y., Fujiyama A., Sasaki T., Shimizu A., Asakawa S.,
RA Shimizu N., Hashimoto S., Yang J., Lee Y., Matsushima K., Sugano S.,
RA Sakaizumi M., Narita T., Ohishi K., Haga S., Ohta F., Nomoto H., Nogata K.,
RA Morishita T., Endo T., Shin-I T., Takeda H., Morishita S., Kohara Y.;
RT "The medaka draft genome and insights into vertebrate genome evolution.";
RL Nature 447:714-719(2007).
RN [2] {ECO:0000313|Ensembl:ENSORLP00000025259.2}
RP IDENTIFICATION.
RC STRAIN=Hd-rR {ECO:0000313|Ensembl:ENSORLP00000025259.2};
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE-ProRule:PRU00649}.
CC -!- SIMILARITY: Belongs to the IWS1 family.
CC {ECO:0000256|ARBA:ARBA00037992}.
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DR AlphaFoldDB; H2N1F6; -.
DR STRING; 8090.ENSORLP00000025259; -.
DR Ensembl; ENSORLT00000025260.2; ENSORLP00000025259.2; ENSORLG00000020380.2.
DR eggNOG; KOG1793; Eukaryota.
DR GeneTree; ENSGT00720000108834; -.
DR HOGENOM; CLU_040584_0_0_1; -.
DR InParanoid; H2N1F6; -.
DR TreeFam; TF315504; -.
DR Proteomes; UP000001038; Chromosome 13.
DR Bgee; ENSORLG00000020380; Expressed in blastula and 14 other cell types or tissues.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0016973; P:poly(A)+ mRNA export from nucleus; IBA:GO_Central.
DR Gene3D; 1.20.930.10; Conserved domain common to transcription factors TFIIS, elongin A, CRSP70; 1.
DR InterPro; IPR035441; TFIIS/LEDGF_dom_sf.
DR InterPro; IPR017923; TFIIS_N.
DR PANTHER; PTHR46010; PROTEIN IWS1 HOMOLOG; 1.
DR PANTHER; PTHR46010:SF1; PROTEIN IWS1 HOMOLOG; 1.
DR Pfam; PF08711; Med26; 1.
DR PROSITE; PS51319; TFIIS_N; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW ProRule:PRU00649}; Reference proteome {ECO:0000313|Proteomes:UP000001038}.
FT DOMAIN 480..558
FT /note="TFIIS N-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51319"
FT REGION 1..390
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 562..620
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 26..50
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 105..125
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 174..276
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 324..342
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 357..384
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 566..580
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 588..605
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 683 AA; 75516 MW; BC3775EE151D53EF CRC64;
MDRDEEDFVS GSRSDDGGGT PVLDEHPLSD GEEMRSPSRQ AEDEGSNDEA PPPAVKRGGA
SGSENEPDSD SEGEAPGSPN NENKSDSDGE APPPAGSGDY SPVKRRSSGS EDEESLQKRR
LSGSDNEGHS SPTKPRGSSS DLEEGAGTPK PAPNADSEDE DAKAAASPNS DSDAETPSRR
KSAQIDSDEE DKPEEGHKEG KWKAVMQSDS EEEEEEGRRR STAAGSDEDE KRSEDSEEER
PAKRKKVIMS DSEDDEEEKA DRPAPKRSRA VSDEENSDSD DASVGPDRSL AAKLKELGSD
SSSEDDGGGA GPGKQQNKEK ALFGSDSESG DEEEKMIADI FGESGDEEEE EFTGFNQEDL
EADKKESKER PEVEESDSDE GVDRGGQDTS FMSDFDLMLA KRKAINSRRR RHRDGGTFIS
DADDVVSAMI TKMNEAAEED RTLNKQKKPA LKKLTLLPQV VMHLKKQDLK ETFIDSGVMS
AITEWISPLP DKSLPALRIR EELLRILQEL PSVSQETLKH SKIGRAVMFL YKHPKESRPN
KDLALKLINE WSRPIFGLTS NYKSMTREER QQRDLDQQMP QRRRLSSGGQ TPRRDLEKQL
TGEEKALRPG DPGFCARARV PMPSNKDYVV RPKWNVEGDS SRSGYKKAIS LLEKHKRRFA
EERKLRRPQG AVKISIEGNR MPL
//