ID H3A313_LATCH Unreviewed; 1268 AA.
AC H3A313;
DT 18-APR-2012, integrated into UniProtKB/TrEMBL.
DT 18-APR-2012, sequence version 1.
DT 24-JAN-2024, entry version 59.
DE RecName: Full=Vigilin {ECO:0000256|ARBA:ARBA00039270};
GN Name=HDLBP {ECO:0000313|Ensembl:ENSLACP00000004034.1};
OS Latimeria chalumnae (Coelacanth).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Coelacanthiformes; Coelacanthidae; Latimeria.
OX NCBI_TaxID=7897 {ECO:0000313|Ensembl:ENSLACP00000004034.1, ECO:0000313|Proteomes:UP000008672};
RN [1] {ECO:0000313|Proteomes:UP000008672}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Wild caught {ECO:0000313|Proteomes:UP000008672};
RA Di Palma F., Alfoldi J., Johnson J., Berlin A., Gnerre S., Jaffe D.,
RA MacCallum I., Young S., Walker B.J., Lander E., Lindblad-Toh K.;
RT "The draft genome of Latimeria chalumnae.";
RL Submitted (AUG-2011) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Ensembl:ENSLACP00000004034.1}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
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DR EMBL; AFYH01110783; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AFYH01110784; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AFYH01110785; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AFYH01110786; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AFYH01110787; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AFYH01110788; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AFYH01110789; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AFYH01110790; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AFYH01110791; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AFYH01110792; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; H3A313; -.
DR STRING; 7897.ENSLACP00000004034; -.
DR Ensembl; ENSLACT00000004070.1; ENSLACP00000004034.1; ENSLACG00000003592.1.
DR eggNOG; KOG2208; Eukaryota.
DR GeneTree; ENSGT00900000141059; -.
DR HOGENOM; CLU_008532_0_0_1; -.
DR InParanoid; H3A313; -.
DR OMA; KTGCRIN; -.
DR TreeFam; TF323767; -.
DR Proteomes; UP000008672; Unassembled WGS sequence.
DR Bgee; ENSLACG00000003592; Expressed in chordate pharynx and 6 other cell types or tissues.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd22405; KH-I_Vigilin_rpt1; 1.
DR CDD; cd22413; KH-I_Vigilin_rpt10; 1.
DR CDD; cd22414; KH-I_Vigilin_rpt11; 1.
DR CDD; cd22415; KH-I_Vigilin_rpt12; 1.
DR CDD; cd22416; KH-I_Vigilin_rpt13; 1.
DR CDD; cd22417; KH-I_Vigilin_rpt14; 1.
DR CDD; cd22418; KH-I_Vigilin_rpt15; 1.
DR CDD; cd22406; KH-I_Vigilin_rpt2; 1.
DR CDD; cd22407; KH-I_Vigilin_rpt3; 1.
DR CDD; cd22408; KH-I_Vigilin_rpt4; 1.
DR CDD; cd22409; KH-I_Vigilin_rpt5; 1.
DR CDD; cd02394; KH-I_Vigilin_rpt6; 1.
DR CDD; cd22410; KH-I_Vigilin_rpt7; 1.
DR CDD; cd22411; KH-I_Vigilin_rpt8; 1.
DR CDD; cd22412; KH-I_Vigilin_rpt9; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 14.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR PANTHER; PTHR10627; SCP160; 1.
DR PANTHER; PTHR10627:SF34; VIGILIN; 1.
DR Pfam; PF00013; KH_1; 14.
DR SMART; SM00322; KH; 14.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 13.
DR PROSITE; PS50084; KH_TYPE_1; 14.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Reference proteome {ECO:0000313|Proteomes:UP000008672};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00117}.
FT DOMAIN 152..220
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 224..292
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 297..365
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 366..432
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 437..505
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 509..578
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 583..651
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 655..724
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 729..798
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 802..871
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 875..971
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 972..1038
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 1050..1119
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT DOMAIN 1123..1192
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT REGION 917..937
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1225..1268
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 779..806
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 1268 AA; 141422 MW; 9FC9B3226A698833 CRC64;
MSSVAVLTQE SFAEHRSGLI QGQVTVGGGG FPYCSEEEND PPTYKDAFPP LPEKVAASDA
VQEQVGAWNK IRPIKSSIIT QVFHVPLEER KYKDMNQFGE GEQAKICLDI MQKTGAHLEL
SLAKDQGLSI MVSGKLEAVM KARKEIVARL QTQASATVAI PKEHHKFVIG KNGEKLQELE
LKTATKIQIP RPDDTSNQIK ITGTKEGIEK ARHEILLISA EQDKRAVERV NIEKAFHPFI
AGAYNKLVSE IMQETSTRIN IPPPSVNKTE IVITGEKEQL ATAVARLKKI YEEKKKKTTT
IAVEVKKSQH KYVIGPKGNS LQEILERTGV SVEIPLPDSS SETVILRGEP DKLGQALTEV
YAKANSFTVS SVTAPSWLHR FIIGKKGQNL SKITQQMPKV HIEFTEGVDK IILEGPTEEV
QEVQTQIEAM VTDLVSRMDY AEITVDPKFH RHLIGKGGAN INRIKEQYKV SVRIPPDNEK
SNLIRIEGDP QGVQQAKKEL LELASRMENE RTKDLIIEQR FHRTIIGQKG EKIKEIRDKF
PEVIINFPDP VQKSEIVQLR GPKNEVEKCA KFMQKMVADL VSSSYSISVP IFKQFHKNII
GKGGVNIKKI REETNTKIDL PAENNNSEMI IITGKKVNCD AARNRILAIQ KELANISEVE
VCIPAKLHNS LIGSKGRLVR SIMEECGGVH IHFPMEGSGS DTVTIRGPVE DVEKAKRQLL
QLAEEKQIKS FTVELRAKPE YHKFLIGKGG GNIRKVRDNT GARIIFPTAE DKDQELITIV
GTEDAVKEAQ KELEVLIKNL DNVVEDSMAV DPKHHRYFVA RRGQVLRDIA EEYGGVMVSF
PRTGTQSDKV TLKGAKDCVE AAKKRMLEII EDLEAQVTIE CVISQKFHRS IMGPKGSRVQ
QITKDFNVQI KFPDREEAPA AGTEPIQETG EANGEVKEVD PTIPKKCDII IISGRKEKCE
AAKEALEALV PVTIEVEVPF DLHRYIIGQK GSGIRKMMDE FEVNIQVPAP ELQLDIISIT
GLASHVDRAR VGLLDRVKEL QAEQEDRALR SFKLTISVDP KYHPKIIGRK GAVITQIRME
HDVNIQFPDK NDENQDQITI TGYEKNAEGA RNAIMKIVGE LEEMVSEDIT LDHRIHARVI
GARGKGIRKI MDEFKVDIRF PQSGAADPNC VTVTGLPENV DEAIDHLLNL EEEYMSDVVE
TEAMRAYMKP RDAVEETRGP SKGFVVRDAP WAAGPTEKAP DMSSSEDFPS FGAPVTPKTT
SPWGPKRF
//