ID H3GMP6_PHYRM Unreviewed; 898 AA.
AC H3GMP6;
DT 18-APR-2012, integrated into UniProtKB/TrEMBL.
DT 18-APR-2012, sequence version 1.
DT 27-MAR-2024, entry version 55.
DE RecName: Full=Nuclear cap-binding protein subunit 1 {ECO:0008006|Google:ProtNLM};
OS Phytophthora ramorum (Sudden oak death agent).
OC Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae;
OC Phytophthora.
OX NCBI_TaxID=164328 {ECO:0000313|EnsemblProtists:Phyra77794, ECO:0000313|Proteomes:UP000005238};
RN [1] {ECO:0000313|Proteomes:UP000005238}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Pr102 {ECO:0000313|Proteomes:UP000005238};
RX PubMed=16946064; DOI=10.1126/science.1128796;
RA Tyler B.M., Tripathy S., Zhang X., Dehal P., Jiang R.H., Aerts A.,
RA Arredondo F.D., Baxter L., Bensasson D., Beynon J.L., Chapman J.,
RA Damasceno C.M., Dorrance A.E., Dou D., Dickerman A.W., Dubchak I.L.,
RA Garbelotto M., Gijzen M., Gordon S.G., Govers F., Grunwald N.J., Huang W.,
RA Ivors K.L., Jones R.W., Kamoun S., Krampis K., Lamour K.H., Lee M.K.,
RA McDonald W.H., Medina M., Meijer H.J., Nordberg E.K., Maclean D.J.,
RA Ospina-Giraldo M.D., Morris P.F., Phuntumart V., Putnam N.H., Rash S.,
RA Rose J.K., Sakihama Y., Salamov A.A., Savidor A., Scheuring C.F.,
RA Smith B.M., Sobral B.W., Terry A., Torto-Alalibo T.A., Win J., Xu Z.,
RA Zhang H., Grigoriev I.V., Rokhsar D.S., Boore J.L.;
RT "Phytophthora genome sequences uncover evolutionary origins and mechanisms
RT of pathogenesis.";
RL Science 313:1261-1266(2006).
RN [2] {ECO:0000313|EnsemblProtists:Phyra77794}
RP IDENTIFICATION.
RC STRAIN=Pr102 {ECO:0000313|EnsemblProtists:Phyra77794};
RG EnsemblProtists;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the NCBP1 family.
CC {ECO:0000256|ARBA:ARBA00007413}.
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DR EMBL; DS566023; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; H3GMP6; -.
DR STRING; 164328.H3GMP6; -.
DR EnsemblProtists; Phyra77794; Phyra77794; Phyra77794.
DR VEuPathDB; FungiDB:PSURA_77794; -.
DR eggNOG; KOG1104; Eukaryota.
DR HOGENOM; CLU_013207_0_0_1; -.
DR InParanoid; H3GMP6; -.
DR OMA; RCREYVS; -.
DR Proteomes; UP000005238; Unassembled WGS sequence.
DR GO; GO:0005845; C:mRNA cap binding complex; IBA:GO_Central.
DR GO; GO:0005846; C:nuclear cap binding complex; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0000339; F:RNA cap binding; IBA:GO_Central.
DR GO; GO:0006406; P:mRNA export from nucleus; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IBA:GO_Central.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR Gene3D; 1.25.40.180; -; 3.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR027159; CBP80.
DR InterPro; IPR015172; MIF4G-like_typ-1.
DR InterPro; IPR015174; MIF4G-like_typ-2.
DR InterPro; IPR003890; MIF4G-like_typ-3.
DR PANTHER; PTHR12412; CAP BINDING PROTEIN; 1.
DR PANTHER; PTHR12412:SF2; NUCLEAR CAP-BINDING PROTEIN SUBUNIT 1; 1.
DR Pfam; PF02854; MIF4G; 1.
DR Pfam; PF09088; MIF4G_like; 1.
DR Pfam; PF09090; MIF4G_like_2; 1.
DR SUPFAM; SSF48371; ARM repeat; 4.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000005238}.
FT DOMAIN 107..292
FT /note="MIF4G"
FT /evidence="ECO:0000259|Pfam:PF02854"
FT DOMAIN 451..578
FT /note="MIF4G-like type 1"
FT /evidence="ECO:0000259|Pfam:PF09088"
FT DOMAIN 652..853
FT /note="MIF4G-like type 2"
FT /evidence="ECO:0000259|Pfam:PF09090"
FT REGION 1..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 7..43
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 898 AA; 100217 MW; 339E1CEF3908AF74 CRC64;
MYGPSRKRSF DDNDREGGGY KRSRVDDRSR RFERRGGGDR DRFNESDRAR AWRLAKKAVV
ELGDGVERDQ LTRTSELLLR ELEPDAQDVK LGHLATLVLR GAARLAHKTA LYATLVGLVN
VRKPAFGREI VAGATRSLQR DVEFFSVEKV EDAETPDTDA FRRDGDVDAV ATRVRLTVRL
LAELCATKVC KAEDVLAMLD SLQGLCTSED WDADDETHAS LRAREDAAAW KDFFASVVLD
ALLHSGKELA CASENLFDSL LSRCREYVSH REEESNPRGA EAGPSSWRTR RLQLQLLWGP
DSDDELPTLC ASNDALSMVW EALNAIRNGD GEDKEVAWKL PGINHPQDIF APDFEKSETH
ALAVSLSIDL AKLDVNKIPS YKTWFRILSD ESGAAGAAIA TLPPASYLIT RSHFVDALET
SYPKPAIAAK LLLGLGRAYN ARFASSQAEG ATPVKSEYLL VETLLAAALG ESADAKLGYY
CSVLYHLVKT DAAIVSPALA VVVELLFREV PTMRAAAVDS FVLLLSHFLS NFDFKWRWAG
WSYVLEASED DPQRLFVSAV IERCVRLSYL QHMQSALPAE FHVLLPPAPK PRIRFQPAKE
EAAAGAVADD DPSAASQFYQ SVTTKLKGHP PASALRSWLD EELPRLEISR AEAIEVVWTC
ILEAGAATFT HMRLLLEKYG RRYELFGGDD QSAEERDADE LVLVKTVASV WLKSPQHIGL
ILNSMLRQGL FRPSTIVTWV FTPDAVQQYS WPYVWEILND TLEFVHDAIR AKTRQLEQAA
APRSADDQDN EEMPDVAALE DGRKRLQDEL QQLLVLLFRG FNRVITEHKA ECDAEDADPR
DNWFRSALAQ MQAVGYRFRV PLEDALDELQ LETFSVSASA DVDAIKIFQL VRDSYRSA
//
