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Database: UniProt
Entry: H6QJQ3_RICMA
LinkDB: H6QJQ3_RICMA
Original site: H6QJQ3_RICMA 
ID   H6QJQ3_RICMA            Unreviewed;       154 AA.
AC   H6QJQ3;
DT   18-APR-2012, integrated into UniProtKB/TrEMBL.
DT   18-APR-2012, sequence version 1.
DT   24-JAN-2024, entry version 56.
DE   RecName: Full=Putative pre-16S rRNA nuclease {ECO:0000256|HAMAP-Rule:MF_00651};
DE            EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651};
GN   ORFNames=RMB_05800 {ECO:0000313|EMBL:AFB31903.1};
OS   Rickettsia massiliae str. AZT80.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Rickettsiales;
OC   Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.
OX   NCBI_TaxID=1105112 {ECO:0000313|EMBL:AFB31903.1, ECO:0000313|Proteomes:UP000007999};
RN   [1] {ECO:0000313|Proteomes:UP000007999}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AZT80 (RMB) {ECO:0000313|Proteomes:UP000007999};
RA   Johnson S.L., Munk A.C., Han S., Bruce D.C., Dasch G.A.;
RT   "Complete genome sequence of Rickettsia parkeri strain Portsmouth.";
RL   Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Could be a nuclease involved in processing of the 5'-end of
CC       pre-16S rRNA. {ECO:0000256|HAMAP-Rule:MF_00651}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00651}.
CC   -!- SIMILARITY: Belongs to the YqgF HJR family. {ECO:0000256|HAMAP-
CC       Rule:MF_00651}.
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DR   EMBL; CP003319; AFB31903.1; -; Genomic_DNA.
DR   RefSeq; WP_014365969.1; NC_016931.1.
DR   AlphaFoldDB; H6QJQ3; -.
DR   KEGG; rmi:RMB_05800; -.
DR   HOGENOM; CLU_098240_2_2_5; -.
DR   Proteomes; UP000007999; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0000967; P:rRNA 5'-end processing; IEA:UniProtKB-UniRule.
DR   CDD; cd16964; YqgF; 1.
DR   Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR   HAMAP; MF_00651; Nuclease_YqgF; 1.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR005227; YqgF.
DR   InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR   InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR   NCBIfam; TIGR00250; RNAse_H_YqgF; 1.
DR   PANTHER; PTHR33317; POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN; 1.
DR   PANTHER; PTHR33317:SF4; POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN; 1.
DR   Pfam; PF03652; RuvX; 1.
DR   SMART; SM00732; YqgFc; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490, ECO:0000256|HAMAP-Rule:MF_00651};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00651};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00651};
KW   Ribosome biogenesis {ECO:0000256|ARBA:ARBA00022517, ECO:0000256|HAMAP-
KW   Rule:MF_00651}.
FT   DOMAIN          17..117
FT                   /note="YqgF/RNase H-like"
FT                   /evidence="ECO:0000259|SMART:SM00732"
SQ   SEQUENCE   154 AA;  17133 MW;  0D7D358893DEE3D5 CRC64;
     MIIKNLQEFY RLLIPNAPLI AIDYGSKKLG IALSNQERSI AMPLNTITEI NTKIVITPLL
     NIIEKYKVCG VIIGLPINMS GAVTEQTNIV MQFAEELAKS INLPIYLQDE RLTTKAANNF
     LKSFGVKRKD RNNNDDAVAA SMILETVLDS IKNI
//
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