ID H6QJQ3_RICMA Unreviewed; 154 AA.
AC H6QJQ3;
DT 18-APR-2012, integrated into UniProtKB/TrEMBL.
DT 18-APR-2012, sequence version 1.
DT 24-JAN-2024, entry version 56.
DE RecName: Full=Putative pre-16S rRNA nuclease {ECO:0000256|HAMAP-Rule:MF_00651};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651};
GN ORFNames=RMB_05800 {ECO:0000313|EMBL:AFB31903.1};
OS Rickettsia massiliae str. AZT80.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rickettsiales;
OC Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.
OX NCBI_TaxID=1105112 {ECO:0000313|EMBL:AFB31903.1, ECO:0000313|Proteomes:UP000007999};
RN [1] {ECO:0000313|Proteomes:UP000007999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AZT80 (RMB) {ECO:0000313|Proteomes:UP000007999};
RA Johnson S.L., Munk A.C., Han S., Bruce D.C., Dasch G.A.;
RT "Complete genome sequence of Rickettsia parkeri strain Portsmouth.";
RL Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Could be a nuclease involved in processing of the 5'-end of
CC pre-16S rRNA. {ECO:0000256|HAMAP-Rule:MF_00651}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00651}.
CC -!- SIMILARITY: Belongs to the YqgF HJR family. {ECO:0000256|HAMAP-
CC Rule:MF_00651}.
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DR EMBL; CP003319; AFB31903.1; -; Genomic_DNA.
DR RefSeq; WP_014365969.1; NC_016931.1.
DR AlphaFoldDB; H6QJQ3; -.
DR KEGG; rmi:RMB_05800; -.
DR HOGENOM; CLU_098240_2_2_5; -.
DR Proteomes; UP000007999; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0000967; P:rRNA 5'-end processing; IEA:UniProtKB-UniRule.
DR CDD; cd16964; YqgF; 1.
DR Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR HAMAP; MF_00651; Nuclease_YqgF; 1.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR005227; YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR NCBIfam; TIGR00250; RNAse_H_YqgF; 1.
DR PANTHER; PTHR33317; POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN; 1.
DR PANTHER; PTHR33317:SF4; POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN; 1.
DR Pfam; PF03652; RuvX; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490, ECO:0000256|HAMAP-Rule:MF_00651};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00651};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00651};
KW Ribosome biogenesis {ECO:0000256|ARBA:ARBA00022517, ECO:0000256|HAMAP-
KW Rule:MF_00651}.
FT DOMAIN 17..117
FT /note="YqgF/RNase H-like"
FT /evidence="ECO:0000259|SMART:SM00732"
SQ SEQUENCE 154 AA; 17133 MW; 0D7D358893DEE3D5 CRC64;
MIIKNLQEFY RLLIPNAPLI AIDYGSKKLG IALSNQERSI AMPLNTITEI NTKIVITPLL
NIIEKYKVCG VIIGLPINMS GAVTEQTNIV MQFAEELAKS INLPIYLQDE RLTTKAANNF
LKSFGVKRKD RNNNDDAVAA SMILETVLDS IKNI
//