GenomeNet

Database: UniProt
Entry: H6WBU7_9LILI
LinkDB: H6WBU7_9LILI
Original site: H6WBU7_9LILI 
ID   H6WBU7_9LILI            Unreviewed;      1378 AA.
AC   H6WBU7;
DT   18-APR-2012, integrated into UniProtKB/TrEMBL.
DT   18-APR-2012, sequence version 1.
DT   24-JAN-2024, entry version 31.
DE   RecName: Full=DNA-directed RNA polymerase subunit beta'' {ECO:0000256|HAMAP-Rule:MF_01324};
DE            EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01324};
DE   AltName: Full=PEP {ECO:0000256|HAMAP-Rule:MF_01324};
DE   AltName: Full=Plastid-encoded RNA polymerase subunit beta'' {ECO:0000256|HAMAP-Rule:MF_01324};
DE            Short=RNA polymerase subunit beta'' {ECO:0000256|HAMAP-Rule:MF_01324};
GN   Name=rpoC2 {ECO:0000256|HAMAP-Rule:MF_01324,
GN   ECO:0000313|EMBL:AEZ01417.1};
OS   Japonolirion osense.
OG   Plastid; Chloroplast {ECO:0000313|EMBL:AEZ01417.1}.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Petrosaviaceae; Japonolirion.
OX   NCBI_TaxID=112799 {ECO:0000313|EMBL:AEZ01417.1};
RN   [1] {ECO:0000313|EMBL:AEZ01417.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Davis J.I., McNeal J.R., Barrett C.F., Chase M.W., Cohen J.I., Duvall M.R.,
RA   Givnish T.J., Graham S.W., Petersen G., Pires J.C., Seberg O.,
RA   Stevenson D.W., Leebens-Mack J.;
RT   "Contrasting Patterns of Support among Plastid Genes and Genomes for Major
RT   Clades of the Monocotyledons.";
RL   Bot. J. Linn. Soc. 0:0-0(2012).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC       DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC       {ECO:0000256|HAMAP-Rule:MF_01324}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC         ECO:0000256|HAMAP-Rule:MF_01324};
CC   -!- COFACTOR:
CC       Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC         Evidence={ECO:0000256|HAMAP-Rule:MF_01324};
CC       Note=Binds 1 Zn(2+) ion per subunit. {ECO:0000256|HAMAP-Rule:MF_01324};
CC   -!- SUBUNIT: In plastids the minimal PEP RNA polymerase catalytic core is
CC       composed of four subunits: alpha, beta, beta', and beta''. When a
CC       (nuclear-encoded) sigma factor is associated with the core the
CC       holoenzyme is formed, which can initiate transcription.
CC       {ECO:0000256|HAMAP-Rule:MF_01324}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000256|HAMAP-
CC       Rule:MF_01324}.
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family. RpoC2
CC       subfamily. {ECO:0000256|HAMAP-Rule:MF_01324}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; JQ068961; AEZ01417.1; -; Genomic_DNA.
DR   GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0006351; P:DNA-templated transcription; IEA:UniProtKB-UniRule.
DR   CDD; cd02655; RNAP_beta'_C; 1.
DR   Gene3D; 1.10.132.30; -; 1.
DR   Gene3D; 1.10.150.390; -; 1.
DR   Gene3D; 1.10.1790.20; -; 1.
DR   Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR   HAMAP; MF_01324; RNApol_bact_RpoC2; 1.
DR   InterPro; IPR012756; DNA-dir_RpoC2_beta_pp.
DR   InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR   InterPro; IPR007083; RNA_pol_Rpb1_4.
DR   InterPro; IPR007081; RNA_pol_Rpb1_5.
DR   InterPro; IPR038120; Rpb1_funnel_sf.
DR   NCBIfam; TIGR02388; rpoC2_cyan; 1.
DR   PANTHER; PTHR34995; DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA; 1.
DR   PANTHER; PTHR34995:SF1; DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA; 1.
DR   Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR   Pfam; PF04998; RNA_pol_Rpb1_5; 2.
DR   SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE   3: Inferred from homology;
KW   Chloroplast {ECO:0000313|EMBL:AEZ01417.1};
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW   ECO:0000256|HAMAP-Rule:MF_01324};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|HAMAP-
KW   Rule:MF_01324};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695, ECO:0000256|HAMAP-
KW   Rule:MF_01324}; Plastid {ECO:0000313|EMBL:AEZ01417.1};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163, ECO:0000256|HAMAP-
KW   Rule:MF_01324};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|HAMAP-
KW   Rule:MF_01324};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|HAMAP-Rule:MF_01324}.
FT   DOMAIN          97..161
FT                   /note="RNA polymerase Rpb1"
FT                   /evidence="ECO:0000259|Pfam:PF05000"
FT   DOMAIN          176..368
FT                   /note="RNA polymerase Rpb1"
FT                   /evidence="ECO:0000259|Pfam:PF04998"
FT   DOMAIN          1182..1267
FT                   /note="RNA polymerase Rpb1"
FT                   /evidence="ECO:0000259|Pfam:PF04998"
FT   BINDING         224
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_01324"
FT   BINDING         294
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_01324"
FT   BINDING         301
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_01324"
FT   BINDING         304
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_01324"
SQ   SEQUENCE   1378 AA;  156410 MW;  444053E859A2AEFD CRC64;
     MEVLMAERAD LVFHNKVIDG TAMKRLISRL IDHFGMAYTS HILDQVKTLG FQQATATSIS
     LGIDDLLTIP SKGWLVQDAE QQSFLLEKHH HYGNVHAVEK LRQSIEIWYA TSEYLRQEMN
     PNFRMTDPSN PVHLMSFSGA RGNASQVHQL VGMRGLMSDP QGQMIDLPIQ SNLREGLSLT
     EYIISCYGAR KGVVDTAVRT SDAGYLTRRL VEVVQHIIVR RTDCGTIRGI SVSPLNGMTE
     NIFIQTLIGR VLADDIYIGP RCIATRNQDI GIGLVNRFIT FRAQPIYIRT PFTCRSTSWI
     CQLCYGRSST HGDLVELGEA VGIIAGQSIG EPGTQLTLRT FHTGGVFTGG TAEHVRAPSN
     GKIKFNEDLL HPTRTRHGHP AFLCSIDLYV TIESQDIIHN VNIPPKSLIL VQNDQYVESE
     QVIAEIRAGA PTLNFKERVR KHIYSESEGE MHWSTDVYHA PEYTYGNVHL LPKTSHLWIL
     AGGPCRSSIV SFSLHKDQDQ MNVHSFFSLE ERYISDLSMT NDRVRHKLSD TSGKRERETL
     DYSRPDRIIS NGHWNFIYPS IFQENSDFLA KRRRNRFIIP LQYDQEREKE LIPRFGISIE
     IPINGILRRN SILAYFDDPR YRRSSSGITK YGTVEVDSIV KKEDLIEYRG AKEFSPKYQM
     KVDRFFFIPE EVYILPGSSS IMVRNNSIIG VDTRITLNTR SRVGGLVRVE RKKKSIELKI
     FSGDIHFPGE TDKISRHSGI LIPPGTGKKN PKESKKLKNG IYVQRITPTK KKYFVSVRPV
     VTYEIADGIN LATLFPQDLL QEKDNVQLRV VNYILYGNGK SIRGIYHTSI QLVRTCLVLN
     WDQEQNGSIE EVHASFVEVR ANDLIRDFIK MELAKPTISY TGKRNDIAGS VWIPNNGLDR
     TNINPFYSKA KIQPLTQHQG TIGIGTLLNR NKECQSLIIL SSSNCSRIGP FNGSKYNKSD
     PIIPIRDLLG PLGTIVPKIA NFYSSYHLIT HNQILLKKYL LLDNFKRTSQ VLKYCLMDEN
     GRIYNPDPCS NIILNPFNLN WRFLHHYYCE ETYTIISLGQ FICENVCLFK YGPHIKKSGQ
     ILIVHVDSLV IRSAKPYLAT PGATVHGHYG EILYEGDTLV TFIYEKSRSG DITQGLPKVE
     QVLEVRSVDS ISMNLEKRVE GWNERIPRIL GIPWGFLIGA ELTIAQSRIS LVNKIQKVYR
     SQGVQIHNRH IEIIVRQVTS KVLVSEDGMS NVFSPGELIG LLRAERAGRV LDEAICYRAI
     LLGITRASLN TQSFISEASF QETARVLAKA ALRGRIDWLK GLKENVVLGG IIPVGTGFIK
     LVHRSRQDKN IHLEIKKKNL FEVEMRDILF HHRELFCSCI PNNFHEPSEQ SFTRFNDS
//
DBGET integrated database retrieval system