ID I0QHJ1_STRSL Unreviewed; 456 AA.
AC I0QHJ1;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 45.
DE SubName: Full=Putative RNA methyltransferase {ECO:0000313|EMBL:EIC80751.1};
GN ORFNames=PS4_26920 {ECO:0000313|EMBL:EIC80751.1};
OS Streptococcus salivarius PS4.
OC Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
OC Streptococcus.
OX NCBI_TaxID=1157946 {ECO:0000313|EMBL:EIC80751.1, ECO:0000313|Proteomes:UP000010314};
RN [1] {ECO:0000313|EMBL:EIC80751.1, ECO:0000313|Proteomes:UP000010314}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=PS4 {ECO:0000313|EMBL:EIC80751.1,
RC ECO:0000313|Proteomes:UP000010314};
RX PubMed=22843595; DOI=10.1128/JB.00896-12;
RA Martin V., Maldonado-Barragan A., Jimenez E., Ruas-Madiedo P.,
RA Fernandez L., Rodriguez J.M.;
RT "Complete Genome Sequence of Streptococcus salivarius PS4, a Strain
RT Isolated from Human Milk.";
RL J. Bacteriol. 194:4466-4467(2012).
CC -!- SIMILARITY: Belongs to the class I-like SAM-binding methyltransferase
CC superfamily. RNA M5U methyltransferase family. {ECO:0000256|PROSITE-
CC ProRule:PRU01024}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EIC80751.1}.
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DR EMBL; AJFW01000046; EIC80751.1; -; Genomic_DNA.
DR AlphaFoldDB; I0QHJ1; -.
DR PATRIC; fig|1157946.4.peg.1381; -.
DR Proteomes; UP000010314; Unassembled WGS sequence.
DR GO; GO:0008173; F:RNA methyltransferase activity; IEA:InterPro.
DR GO; GO:0008757; F:S-adenosylmethionine-dependent methyltransferase activity; IEA:InterPro.
DR GO; GO:0034470; P:ncRNA processing; IEA:UniProt.
DR GO; GO:0001510; P:RNA methylation; IEA:GOC.
DR CDD; cd02440; AdoMet_MTases; 1.
DR Gene3D; 2.40.50.1070; -; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 3.40.50.150; Vaccinia Virus protein VP39; 1.
DR InterPro; IPR030390; MeTrfase_TrmA_AS.
DR InterPro; IPR030391; MeTrfase_TrmA_CS.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR029063; SAM-dependent_MTases_sf.
DR InterPro; IPR002792; TRAM_dom.
DR InterPro; IPR010280; U5_MeTrfase_fam.
DR NCBIfam; TIGR00479; rumA; 1.
DR PANTHER; PTHR11061:SF48; 23S RRNA (URACIL(747)-C(5))-METHYLTRANSFERASE RLMC; 1.
DR PANTHER; PTHR11061; RNA M5U METHYLTRANSFERASE; 1.
DR Pfam; PF01938; TRAM; 1.
DR Pfam; PF05958; tRNA_U5-meth_tr; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF53335; S-adenosyl-L-methionine-dependent methyltransferases; 1.
DR PROSITE; PS51687; SAM_MT_RNA_M5U; 1.
DR PROSITE; PS50926; TRAM; 1.
DR PROSITE; PS01230; TRMA_1; 1.
DR PROSITE; PS01231; TRMA_2; 1.
PE 3: Inferred from homology;
KW Methyltransferase {ECO:0000256|ARBA:ARBA00022603, ECO:0000256|PROSITE-
KW ProRule:PRU01024};
KW S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691,
KW ECO:0000256|PROSITE-ProRule:PRU01024};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|PROSITE-
KW ProRule:PRU01024}.
FT DOMAIN 1..59
FT /note="TRAM"
FT /evidence="ECO:0000259|PROSITE:PS50926"
FT ACT_SITE 408
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU10015"
FT ACT_SITE 408
FT /note="Nucleophile"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT BINDING 283
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT BINDING 312
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT BINDING 333
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT BINDING 381
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
SQ SEQUENCE 456 AA; 51476 MW; 107C89BBF5364A93 CRC64;
MLNKNAIVEV EIVDLTHEGA GVAKVDGFVF FVDNALPGEV IKMRVLKLKK NIGFGKVEEF
VTLSPNRNQD IDATYLRSGI ADFGHMTYEE QLKFKRKQVV DNLYKTAGVS DVEVAETLGM
ETPYAYRNKA QVPVRRVKGQ LETGFYRKNS HDLIPIEDFL IQDKEIDKLI VFVRDLLRRY
DLKPYDEKEQ TGLIRHLVVR RGHYSGQMML VFVTTRPKVF RIDQIIAKIT EAFPSVVSII
QNINDKNTNA IFGKEFRTLY GQDTITDSML GNDYEISAQS FYQVNTEMAE KLYQTAIDFS
DLTSDSIVID AYSGIGTIGL SFAKQVKEVY GVEVIETAVE DAKKNAERNG ITNAHYVADS
AENAMAKWSK DGIKPDVIIV DPPRKGLTES FIKASVAMQP EKITYVSCNP ATMARDIKRY
QELGYELKKV QPVDLFPQTH HVEAVSLLVR AETSAK
//