ID I1DY84_9GAMM Unreviewed; 415 AA.
AC I1DY84;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 38.
DE SubName: Full=Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:GAB59012.1};
GN ORFNames=RNAN_2002 {ECO:0000313|EMBL:GAB59012.1};
OS Rheinheimera nanhaiensis E407-8.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae;
OC Rheinheimera.
OX NCBI_TaxID=562729 {ECO:0000313|EMBL:GAB59012.1, ECO:0000313|Proteomes:UP000004374};
RN [1] {ECO:0000313|EMBL:GAB59012.1, ECO:0000313|Proteomes:UP000004374}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=E407-8 {ECO:0000313|EMBL:GAB59012.1,
RC ECO:0000313|Proteomes:UP000004374};
RX PubMed=23209246; DOI=10.1128/JB.01922-12;
RA Zhang X.-Y., Zhang Y.-J., Qin Q.-L., Xie B.-B., Chen X.-L., Zhou B.-C.,
RA Zhang Y.-Z.;
RT "Genome Sequence of the Protease-Producing Bacterium Rheinheimera
RT nanhaiensis E407-8T, Isolated from Deep-Sea Sediment of the South China
RT Sea.";
RL J. Bacteriol. 194:7001-7002(2012).
CC -!- SIMILARITY: Belongs to the short-chain fatty acyl-CoA assimilation
CC regulator (ScfR) family. {ECO:0000256|ARBA:ARBA00007227}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GAB59012.1}.
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DR EMBL; BAFK01000009; GAB59012.1; -; Genomic_DNA.
DR RefSeq; WP_008221239.1; NZ_BAFK01000009.1.
DR AlphaFoldDB; I1DY84; -.
DR STRING; 562729.RNAN_2002; -.
DR OrthoDB; 9796786at2; -.
DR Proteomes; UP000004374; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 1.10.10.2910; -; 1.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR010359; IrrE_HExxH.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR Pfam; PF13443; HTH_26; 1.
DR Pfam; PF06114; Peptidase_M78; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR PROSITE; PS50943; HTH_CROC1; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000004374}.
FT DOMAIN 79..134
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000259|PROSITE:PS50943"
SQ SEQUENCE 415 AA; 46942 MW; 58AD9BA0A8F9C65E CRC64;
MIYNDQQLRV TSGQLVELKK SLESIEASSS ADVFTQIQLS AISSQIYDLQ KQIDDYNSLL
TSGPLKVNCS DLSELPFVLV KCRIANFISQ KELAERVGLS ELDIIRFENS KYSGVDQNTL
MDISKIVGVT ISDQVLTSAS QKGISFNKKP FDWSLFPIKE MAKRGWISLK GNVSPEKQLQ
EFFFSCGGSN FLAALHKKQI HGGNNPNRYA LIAWQARVLQ KAKLKVDSYE IGKFSLDDSW
INELIKLSVK DDAPLLVQQL LAKHGIILVV EPHLQGTYLD GAAMLFQDKH PVIALTLRHD
RLDNFWFALM HELGHVFLHL YTSMFTEFFD EEDQEVGDRF EIEANDYALE NTISKEKWDS
CLSRFYINEE TVLADATNLG IHPSIVAGRI RKELTNYSIL SSLVGQGKVR LYFGI
//