ID I1I9M8_BRADI Unreviewed; 443 AA.
AC I1I9M8;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 65.
DE RecName: Full=HMG box domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100842658 {ECO:0000313|EnsemblPlants:KQJ99454};
GN ORFNames=BRADI_3g43310v3 {ECO:0000313|EMBL:KQJ99453.1};
OS Brachypodium distachyon (Purple false brome) (Trachynia distachya).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Stipodae; Brachypodieae; Brachypodium.
OX NCBI_TaxID=15368 {ECO:0000313|EnsemblPlants:KQJ99454};
RN [1] {ECO:0000313|EMBL:KQJ99453.1, ECO:0000313|EnsemblPlants:KQJ99454}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ99453.1,
RC ECO:0000313|EnsemblPlants:KQJ99454};
RX PubMed=20148030; DOI=10.1038/nature08747;
RG International Brachypodium Initiative;
RT "Genome sequencing and analysis of the model grass Brachypodium
RT distachyon.";
RL Nature 463:763-768(2010).
RN [2] {ECO:0000313|EMBL:KQJ99453.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ99453.1};
RG The International Brachypodium Initiative;
RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D.,
RA Barry K., Shu S., Lindquist E., Wang M., Pitluck S., Vogel J.P.,
RA Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W.;
RT "WGS assembly of Brachypodium distachyon.";
RL Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQJ99454}
RP IDENTIFICATION.
RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:KQJ99454};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM000882; KQJ99453.1; -; Genomic_DNA.
DR EMBL; CM000882; KQJ99454.1; -; Genomic_DNA.
DR RefSeq; XP_003572521.1; XM_003572473.3.
DR RefSeq; XP_010235431.1; XM_010237129.2.
DR AlphaFoldDB; I1I9M8; -.
DR STRING; 15368.I1I9M8; -.
DR EnsemblPlants; KQJ99453; KQJ99453; BRADI_3g43310v3.
DR EnsemblPlants; KQJ99454; KQJ99454; BRADI_3g43310v3.
DR GeneID; 100842658; -.
DR Gramene; KQJ99453; KQJ99453; BRADI_3g43310v3.
DR Gramene; KQJ99454; KQJ99454; BRADI_3g43310v3.
DR KEGG; bdi:100842658; -.
DR eggNOG; KOG0381; Eukaryota.
DR eggNOG; KOG2744; Eukaryota.
DR HOGENOM; CLU_035371_1_0_1; -.
DR InParanoid; I1I9M8; -.
DR OMA; VKSDNRW; -.
DR OrthoDB; 316588at2759; -.
DR Proteomes; UP000008810; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0090406; C:pollen tube; IEA:EnsemblPlants.
DR GO; GO:0000400; F:four-way junction DNA binding; IEA:EnsemblPlants.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IEA:EnsemblPlants.
DR GO; GO:0019760; P:glucosinolate metabolic process; IEA:EnsemblPlants.
DR GO; GO:0009846; P:pollen germination; IEA:EnsemblPlants.
DR GO; GO:0009860; P:pollen tube growth; IEA:EnsemblPlants.
DR CDD; cd16872; ARID_HMGB9-like; 1.
DR CDD; cd22009; HMG-box_AtHMGB9-like; 1.
DR Gene3D; 1.10.150.60; ARID DNA-binding domain; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR InterPro; IPR001606; ARID_dom.
DR InterPro; IPR036431; ARID_dom_sf.
DR InterPro; IPR045303; ARID_HMGB9-like.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR46691:SF3; HIGH MOBILITY GROUP B PROTEIN 15; 1.
DR PANTHER; PTHR46691; HIGH MOBILITY GROUP B PROTEIN 9; 1.
DR Pfam; PF01388; ARID; 1.
DR Pfam; PF00505; HMG_box; 1.
DR SMART; SM01014; ARID; 1.
DR SMART; SM00501; BRIGHT; 1.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF46774; ARID-like; 1.
DR SUPFAM; SSF47095; HMG-box; 1.
DR PROSITE; PS51011; ARID; 1.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Reference proteome {ECO:0000313|Proteomes:UP000008810}.
FT DOMAIN 52..143
FT /note="ARID"
FT /evidence="ECO:0000259|PROSITE:PS51011"
FT DOMAIN 264..331
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 264..331
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 13..37
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 155..190
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 241..270
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 366..443
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 173..189
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 245..259
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 366..384
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 401..418
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 422..436
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 443 AA; 49374 MW; D5B8CC8412E4522A CRC64;
MSAAAAEMAV ADAAAPAAAG KGKEKVDEPA PGSSKGRFLA YPPRMAEHKA VAADAALFRA
ALERLHAHMG TKLKVPIIGG KDLDLHQLFK EVTSRGGIDK VKAENRWREV TASFIFPATA
TNASFMLKKY YMSLLYHFEQ QYFFGAEGWH EQETDPRSMS CVEVRAETQA TQKRKRGNSG
PSDPASSSDN VDVDVLIDAK FEHGYIVTVT TGSKSTKAIL YNFTEEPALA TPAPAIAINN
TDLKGGRRRK RRRKKLSTTD PRHPKPNRSG YNFFFQDQHR MLKPEYPGRD RLISKMIGER
WNNLSPEDKA VYQERGVQDK ERYQAQLAAY REEIRTGQPI SNAVPIQQRF PRTEVTIDEV
DSNVSKGDML LSNQGYNNSS DESDDSGGKL VEDEEFNTET SPEPSMETTD SPGQLNPSAD
GDQFELRRRE NPKENEKQNA PPS
//
