ID I1IIQ1_BRADI Unreviewed; 392 AA.
AC I1IIQ1;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 47.
DE RecName: Full=Pre-mRNA-splicing factor 38 {ECO:0000256|RuleBase:RU367025};
GN Name=100844813 {ECO:0000313|EnsemblPlants:KQJ86873};
GN ORFNames=BRADI_4g08180v3 {ECO:0000313|EMBL:KQJ86873.1};
OS Brachypodium distachyon (Purple false brome) (Trachynia distachya).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Stipodae; Brachypodieae; Brachypodium.
OX NCBI_TaxID=15368 {ECO:0000313|EMBL:KQJ86873.1};
RN [1] {ECO:0000313|EMBL:KQJ86873.1, ECO:0000313|EnsemblPlants:KQJ86873}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ86873.1,
RC ECO:0000313|EnsemblPlants:KQJ86873};
RX PubMed=20148030; DOI=10.1038/nature08747;
RG International Brachypodium Initiative;
RT "Genome sequencing and analysis of the model grass Brachypodium
RT distachyon.";
RL Nature 463:763-768(2010).
RN [2] {ECO:0000313|EMBL:KQJ86873.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ86873.1};
RG The International Brachypodium Initiative;
RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D.,
RA Barry K., Shu S., Lindquist E., Wang M., Pitluck S., Vogel J.P.,
RA Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W.;
RT "WGS assembly of Brachypodium distachyon.";
RL Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQJ86873}
RP IDENTIFICATION.
RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:KQJ86873};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
CC -!- FUNCTION: Required for pre-mRNA splicing.
CC {ECO:0000256|RuleBase:RU367025}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|RuleBase:RU367025}.
CC -!- SIMILARITY: Belongs to the PRP38 family.
CC {ECO:0000256|ARBA:ARBA00006164, ECO:0000256|RuleBase:RU367025}.
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DR EMBL; CM000883; KQJ86873.1; -; Genomic_DNA.
DR RefSeq; XP_010237306.1; XM_010239004.2.
DR AlphaFoldDB; I1IIQ1; -.
DR STRING; 15368.I1IIQ1; -.
DR EnsemblPlants; KQJ86873; KQJ86873; BRADI_4g08180v3.
DR GeneID; 100844813; -.
DR Gramene; KQJ86873; KQJ86873; BRADI_4g08180v3.
DR eggNOG; KOG2889; Eukaryota.
DR HOGENOM; CLU_039466_1_2_1; -.
DR InParanoid; I1IIQ1; -.
DR OMA; GMELRYI; -.
DR OrthoDB; 5485563at2759; -.
DR Proteomes; UP000008810; Chromosome 4.
DR ExpressionAtlas; I1IIQ1; baseline.
DR GO; GO:0071011; C:precatalytic spliceosome; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:UniProtKB-UniRule.
DR InterPro; IPR005037; PRP38.
DR InterPro; IPR024767; PRP38_C.
DR PANTHER; PTHR23142:SF1; PRE-MRNA-SPLICING FACTOR 38A; 1.
DR PANTHER; PTHR23142; UNCHARACTERIZED; 1.
DR Pfam; PF03371; PRP38; 1.
DR Pfam; PF12871; PRP38_assoc; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664,
KW ECO:0000256|RuleBase:RU367025};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187,
KW ECO:0000256|RuleBase:RU367025};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU367025};
KW Reference proteome {ECO:0000313|Proteomes:UP000008810};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728, ECO:0000256|RuleBase:RU367025}.
FT DOMAIN 179..274
FT /note="Pre-mRNA-splicing factor 38 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF12871"
FT REGION 180..392
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 185..200
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 201..305
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 317..368
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 392 AA; 47093 MW; 2C715023F5E0BD22 CRC64;
MANRTDPLAR SIHGTNPQNL VEKIVRSKIY QSTYWKEQCF GLTAETLVDK AMELDHTGGT
HGGNRRPTPF LCLTLKMLQI QPDKDIVVEF IKNEDYKYVR VLGAFYLRLT GTIADVYQYL
EPLYNDYRKI RQKLNDGKFM LTHVDEFIDE LLTKDYCCDT ALPRIQKRWV LEASGTLEPR
RSALEDDFEE EEEDKEDGQP MDVDEPSGRE KQDHYRARSP TKERDRDRKH ERHHRERDHD
RDRDYDRDYG RGRERDRDRD RGRERDRERD RGDRDRHRIR DDDYNRDRDR ERDRDGRERE
RRDRDRGRHR SRSRSRSRDR RERDREDGEH RRRRGRGSAS PRGRAEDDGR REEPKKRKEK
KDKGAGNGVD SNDPEIIEMN KLRASLGMKP LK
//
