ID I1JZP1_SOYBN Unreviewed; 579 AA.
AC I1JZP1;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 27-MAR-2024, entry version 61.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN Name=100788135 {ECO:0000313|EnsemblPlants:KRH56908};
GN ORFNames=GLYMA_05G026400 {ECO:0000313|EMBL:KRH56908.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH56908};
RN [1] {ECO:0000313|EMBL:KRH56908.1, ECO:0000313|EnsemblPlants:KRH56908}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH56908};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH56908.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH56908}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH56908};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH56908.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH56908.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM000838; KRH56908.1; -; Genomic_DNA.
DR RefSeq; XP_003525465.1; XM_003525417.3.
DR AlphaFoldDB; I1JZP1; -.
DR SMR; I1JZP1; -.
DR STRING; 3847.I1JZP1; -.
DR PaxDb; 3847-GLYMA05G01020-1; -.
DR EnsemblPlants; KRH56908; KRH56908; GLYMA_05G026400.
DR GeneID; 100788135; -.
DR Gramene; KRH56908; KRH56908; GLYMA_05G026400.
DR KEGG; gmx:100788135; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; I1JZP1; -.
DR OMA; AIQTTPG; -.
DR OrthoDB; 456150at2759; -.
DR Proteomes; UP000008827; Chromosome 5.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR24015:SF96; OS01G0848300 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 4.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 68..102
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 169..203
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 272..306
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 307..342
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 487..579
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 579 AA; 65120 MW; C5234E63DA13ED72 CRC64;
MALETVISAI KSVSHKTRLL QIHAHIIRTT LIQYPTVSLQ FLSRIALSGP LQDASYSQRF
FGQLSHPLVS HYNTMIRACS MSDSPQKGLL LYRDMRRRGI AADPLSSSFA VKSCIRFLYL
PGGVQVHCNI FKDGHQWDTL LLTAVMDLYS LCQRGGDACK VFDEMPHRDT VAWNVMISCC
IRNNRTRDAL SLFDVMQGSS YKCEPDDVTC LLLLQACAHL NALEFGERIH GYIMERGYRD
ALNLCNSLIS MYSRCGCLDK AYEVFKGMGN KNVVSWSAMI SGLAMNGYGR EAIEAFEEML
RIGVLPDDQT FTGVLSACSY SGMVDEGMSF FHRMSREFGV TPNVHHYGCM VDLLGRAGLL
DKAYQLIMSM VVKPDSTMWR TLLGACRIHG HVTLGERVIG HLIELKAQEA GDYVLLLNIY
SSAGHWEKVA EVRKLMKNKS IQTTPGCSTI ELKGAVHEFV VDDVSHSRNR EIYETLDEIN
HQLRIAGYVV ELSSELHKMD DKEKGYVLSH HSEKLAVAFG VLATPPGTIL RVASNLRVCV
DCHNFLKLFS GVYNRDVVLR DHNRFHHFRG GRCSCSDYW
//
