ID I1K961_SOYBN Unreviewed; 275 AA.
AC I1K961;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 60.
DE RecName: Full=Ribonuclease H2 subunit B {ECO:0000256|ARBA:ARBA00019062};
DE AltName: Full=Ribonuclease HI subunit B {ECO:0000256|ARBA:ARBA00033464};
GN Name=100305835 {ECO:0000313|EnsemblPlants:KRH52620};
GN ORFNames=GLYMA_06G078200 {ECO:0000313|EMBL:KRH52618.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH52620};
RN [1] {ECO:0000313|EMBL:KRH52618.1, ECO:0000313|EnsemblPlants:KRH52620}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH52620};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH52618.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH52620}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH52620};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH52618.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH52618.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Non catalytic subunit of RNase H2, an endonuclease that
CC specifically degrades the RNA of RNA:DNA hybrids. Participates in DNA
CC replication, possibly by mediating the removal of lagging-strand
CC Okazaki fragment RNA primers during DNA replication. Mediates the
CC excision of single ribonucleotides from DNA:RNA duplexes.
CC {ECO:0000256|ARBA:ARBA00024778}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM000839; KRH52618.1; -; Genomic_DNA.
DR EMBL; CM000839; KRH52619.1; -; Genomic_DNA.
DR EMBL; CM000839; KRH52620.1; -; Genomic_DNA.
DR RefSeq; XP_006580916.1; XM_006580853.2.
DR RefSeq; XP_006580917.1; XM_006580854.2.
DR RefSeq; XP_006580918.1; XM_006580855.2.
DR AlphaFoldDB; I1K961; -.
DR SMR; I1K961; -.
DR STRING; 3847.I1K961; -.
DR PaxDb; 3847-GLYMA06G08230-2; -.
DR EnsemblPlants; KRH52618; KRH52618; GLYMA_06G078200.
DR EnsemblPlants; KRH52619; KRH52619; GLYMA_06G078200.
DR EnsemblPlants; KRH52620; KRH52620; GLYMA_06G078200.
DR GeneID; 100305835; -.
DR Gramene; KRH52618; KRH52618; GLYMA_06G078200.
DR Gramene; KRH52619; KRH52619; GLYMA_06G078200.
DR Gramene; KRH52620; KRH52620; GLYMA_06G078200.
DR eggNOG; KOG4705; Eukaryota.
DR HOGENOM; CLU_086483_0_0_1; -.
DR InParanoid; I1K961; -.
DR OMA; ANENNMA; -.
DR OrthoDB; 38794at2759; -.
DR Proteomes; UP000008827; Chromosome 6.
DR ExpressionAtlas; I1K961; baseline and differential.
DR GO; GO:0005654; C:nucleoplasm; IBA:GO_Central.
DR GO; GO:0032299; C:ribonuclease H2 complex; IBA:GO_Central.
DR GO; GO:0006401; P:RNA catabolic process; IBA:GO_Central.
DR CDD; cd09270; RNase_H2-B; 1.
DR Gene3D; 1.10.20.120; -; 1.
DR Gene3D; 2.20.25.530; -; 1.
DR InterPro; IPR040456; RNase_H2_suB.
DR InterPro; IPR019024; RNase_H2_suB_wHTH.
DR InterPro; IPR041195; Rnh202_N.
DR PANTHER; PTHR13383; RIBONUCLEASE H2 SUBUNIT B; 1.
DR PANTHER; PTHR13383:SF11; RIBONUCLEASE H2 SUBUNIT B; 1.
DR Pfam; PF09468; RNase_H2-Ydr279; 1.
DR Pfam; PF17745; Ydr279_N; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT DOMAIN 27..81
FT /note="Rnh202 triple barrel"
FT /evidence="ECO:0000259|Pfam:PF17745"
FT DOMAIN 84..179
FT /note="Ribonuclease H2 subunit B wHTH"
FT /evidence="ECO:0000259|Pfam:PF09468"
FT REGION 223..275
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 234..269
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 275 AA; 31512 MW; 0AA8E56E7922EEB9 CRC64;
MSWCDSVQEP RILVAPDPGT DGNGLGQMIS LRHPKSGNAT QYLFVNGMLQ ELQWFKNLYG
SWFLGDYITE DGRMYLSTPI DPVFIMLPIF EEARMKKGDD LGRFRQLDEI LFIDGYPGYM
QLMSVVENCM LVVSEVKEIG SSKFFRLDDS KVLRWLCYKV CQLKQTLPKL DKNYAVQSEK
DTLIDAVSIL GEYLKEKPWL QLLCDHLKLN ILEVTGKAQV NAEESNPGLR NELQEQSNDK
KATTAKKGRQ AKKVKLETES HNIKDMFSRA SRKKN
//