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Database: UniProt
Entry: I1K961_SOYBN
LinkDB: I1K961_SOYBN
Original site: I1K961_SOYBN 
ID   I1K961_SOYBN            Unreviewed;       275 AA.
AC   I1K961;
DT   13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT   13-JUN-2012, sequence version 1.
DT   24-JAN-2024, entry version 60.
DE   RecName: Full=Ribonuclease H2 subunit B {ECO:0000256|ARBA:ARBA00019062};
DE   AltName: Full=Ribonuclease HI subunit B {ECO:0000256|ARBA:ARBA00033464};
GN   Name=100305835 {ECO:0000313|EnsemblPlants:KRH52620};
GN   ORFNames=GLYMA_06G078200 {ECO:0000313|EMBL:KRH52618.1};
OS   Glycine max (Soybean) (Glycine hispida).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC   Glycine subgen. Soja.
OX   NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH52620};
RN   [1] {ECO:0000313|EMBL:KRH52618.1, ECO:0000313|EnsemblPlants:KRH52620}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH52620};
RC   TISSUE=Callus {ECO:0000313|EMBL:KRH52618.1};
RX   PubMed=20075913; DOI=10.1038/nature08670;
RA   Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA   Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA   Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA   Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA   Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA   Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA   Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA   Stacey G., Shoemaker R.C., Jackson S.A.;
RT   "Genome sequence of the palaeopolyploid soybean.";
RL   Nature 463:178-183(2010).
RN   [2] {ECO:0000313|EnsemblPlants:KRH52620}
RP   IDENTIFICATION.
RC   STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH52620};
RG   EnsemblPlants;
RL   Submitted (FEB-2018) to UniProtKB.
RN   [3] {ECO:0000313|EMBL:KRH52618.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Callus {ECO:0000313|EMBL:KRH52618.1};
RA   Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA   Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA   Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA   Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA   Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA   Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA   Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA   Jackson S.;
RT   "WGS assembly of Glycine max.";
RL   Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Non catalytic subunit of RNase H2, an endonuclease that
CC       specifically degrades the RNA of RNA:DNA hybrids. Participates in DNA
CC       replication, possibly by mediating the removal of lagging-strand
CC       Okazaki fragment RNA primers during DNA replication. Mediates the
CC       excision of single ribonucleotides from DNA:RNA duplexes.
CC       {ECO:0000256|ARBA:ARBA00024778}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   EMBL; CM000839; KRH52618.1; -; Genomic_DNA.
DR   EMBL; CM000839; KRH52619.1; -; Genomic_DNA.
DR   EMBL; CM000839; KRH52620.1; -; Genomic_DNA.
DR   RefSeq; XP_006580916.1; XM_006580853.2.
DR   RefSeq; XP_006580917.1; XM_006580854.2.
DR   RefSeq; XP_006580918.1; XM_006580855.2.
DR   AlphaFoldDB; I1K961; -.
DR   SMR; I1K961; -.
DR   STRING; 3847.I1K961; -.
DR   PaxDb; 3847-GLYMA06G08230-2; -.
DR   EnsemblPlants; KRH52618; KRH52618; GLYMA_06G078200.
DR   EnsemblPlants; KRH52619; KRH52619; GLYMA_06G078200.
DR   EnsemblPlants; KRH52620; KRH52620; GLYMA_06G078200.
DR   GeneID; 100305835; -.
DR   Gramene; KRH52618; KRH52618; GLYMA_06G078200.
DR   Gramene; KRH52619; KRH52619; GLYMA_06G078200.
DR   Gramene; KRH52620; KRH52620; GLYMA_06G078200.
DR   eggNOG; KOG4705; Eukaryota.
DR   HOGENOM; CLU_086483_0_0_1; -.
DR   InParanoid; I1K961; -.
DR   OMA; ANENNMA; -.
DR   OrthoDB; 38794at2759; -.
DR   Proteomes; UP000008827; Chromosome 6.
DR   ExpressionAtlas; I1K961; baseline and differential.
DR   GO; GO:0005654; C:nucleoplasm; IBA:GO_Central.
DR   GO; GO:0032299; C:ribonuclease H2 complex; IBA:GO_Central.
DR   GO; GO:0006401; P:RNA catabolic process; IBA:GO_Central.
DR   CDD; cd09270; RNase_H2-B; 1.
DR   Gene3D; 1.10.20.120; -; 1.
DR   Gene3D; 2.20.25.530; -; 1.
DR   InterPro; IPR040456; RNase_H2_suB.
DR   InterPro; IPR019024; RNase_H2_suB_wHTH.
DR   InterPro; IPR041195; Rnh202_N.
DR   PANTHER; PTHR13383; RIBONUCLEASE H2 SUBUNIT B; 1.
DR   PANTHER; PTHR13383:SF11; RIBONUCLEASE H2 SUBUNIT B; 1.
DR   Pfam; PF09468; RNase_H2-Ydr279; 1.
DR   Pfam; PF17745; Ydr279_N; 1.
PE   4: Predicted;
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT   DOMAIN          27..81
FT                   /note="Rnh202 triple barrel"
FT                   /evidence="ECO:0000259|Pfam:PF17745"
FT   DOMAIN          84..179
FT                   /note="Ribonuclease H2 subunit B wHTH"
FT                   /evidence="ECO:0000259|Pfam:PF09468"
FT   REGION          223..275
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        234..269
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   275 AA;  31512 MW;  0AA8E56E7922EEB9 CRC64;
     MSWCDSVQEP RILVAPDPGT DGNGLGQMIS LRHPKSGNAT QYLFVNGMLQ ELQWFKNLYG
     SWFLGDYITE DGRMYLSTPI DPVFIMLPIF EEARMKKGDD LGRFRQLDEI LFIDGYPGYM
     QLMSVVENCM LVVSEVKEIG SSKFFRLDDS KVLRWLCYKV CQLKQTLPKL DKNYAVQSEK
     DTLIDAVSIL GEYLKEKPWL QLLCDHLKLN ILEVTGKAQV NAEESNPGLR NELQEQSNDK
     KATTAKKGRQ AKKVKLETES HNIKDMFSRA SRKKN
//
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