ID I1KCV2_SOYBN Unreviewed; 448 AA.
AC I1KCV2;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 08-NOV-2023, entry version 59.
DE RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=102668293 {ECO:0000313|EnsemblPlants:KRH54580};
GN ORFNames=GLYMA_06G196000 {ECO:0000313|EMBL:KRH54580.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH54580.1};
RN [1] {ECO:0000313|EMBL:KRH54580.1, ECO:0000313|EnsemblPlants:KRH54580}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH54580};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH54580.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH54580}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH54580};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH54580.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH54580.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000839; KRH54580.1; -; Genomic_DNA.
DR RefSeq; XP_006582543.1; XM_006582480.2.
DR AlphaFoldDB; I1KCV2; -.
DR SMR; I1KCV2; -.
DR PaxDb; 3847-GLYMA06G21100-1; -.
DR EnsemblPlants; KRH54580; KRH54580; GLYMA_06G196000.
DR GeneID; 102668293; -.
DR Gramene; KRH54580; KRH54580; GLYMA_06G196000.
DR KEGG; gmx:102668293; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_2_1; -.
DR InParanoid; I1KCV2; -.
DR OMA; WEEKIML; -.
DR OrthoDB; 460923at2759; -.
DR Proteomes; UP000008827; Chromosome 6.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR046960; PPR_At4g14850-like_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 3.
DR PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 1.
DR PROSITE; PS51375; PPR; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 143..177
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 245..275
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 448 AA; 50563 MW; 1FA42E249FEC23E2 CRC64;
MTHLKLKWFS ILLRRSVNKL VHRPMSTWHH KAETPISLKP PKPNQTLKNH LECNRHAKVL
LLFRSFLRKK PTLNLIDSFS LLYALKACNH KHPSTQGKQL HTLIIKLGYQ PIVQLQTTLL
KTYAQRSNLR DAHQVFDEIP AKNIICWTSL ISAYVDNHKP GRALQLFREM QMNNVEPDQV
TVTVALSACA ETGALKMGEW IHGFVRRKQV MNRDLCLDNA LINMYAKCGD VVRARKVFDG
MRNKDVTTWT SMIVGHAVHG QAREALQLFL EMSARRDKDD CVMTPNDVTF IGVLMACSHA
GLVEEGKLHF RSMSEVYGIQ PREAHFGCMV DLLCRGGHLR DAYDFIIEML VPPNAVVWRT
LLGACSVHGE LELAAEVRQK LLKLDPGYVG DSVAMSNIYA NKGMWNNKIV VRNQIKHSRA
PGCSSIEVGS GAGEFVTSDD DHPLMTDV
//