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Entry: I1KCV2_SOYBN
LinkDB: I1KCV2_SOYBN
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ID   I1KCV2_SOYBN            Unreviewed;       448 AA.
AC   I1KCV2;
DT   13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT   09-JAN-2013, sequence version 2.
DT   08-NOV-2023, entry version 59.
DE   RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   Name=102668293 {ECO:0000313|EnsemblPlants:KRH54580};
GN   ORFNames=GLYMA_06G196000 {ECO:0000313|EMBL:KRH54580.1};
OS   Glycine max (Soybean) (Glycine hispida).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC   Glycine subgen. Soja.
OX   NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH54580.1};
RN   [1] {ECO:0000313|EMBL:KRH54580.1, ECO:0000313|EnsemblPlants:KRH54580}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH54580};
RC   TISSUE=Callus {ECO:0000313|EMBL:KRH54580.1};
RX   PubMed=20075913; DOI=10.1038/nature08670;
RA   Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA   Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA   Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA   Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA   Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA   Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA   Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA   Stacey G., Shoemaker R.C., Jackson S.A.;
RT   "Genome sequence of the palaeopolyploid soybean.";
RL   Nature 463:178-183(2010).
RN   [2] {ECO:0000313|EnsemblPlants:KRH54580}
RP   IDENTIFICATION.
RC   STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH54580};
RG   EnsemblPlants;
RL   Submitted (FEB-2018) to UniProtKB.
RN   [3] {ECO:0000313|EMBL:KRH54580.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Callus {ECO:0000313|EMBL:KRH54580.1};
RA   Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA   Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA   Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA   Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA   Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA   Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA   Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA   Jackson S.;
RT   "WGS assembly of Glycine max.";
RL   Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CM000839; KRH54580.1; -; Genomic_DNA.
DR   RefSeq; XP_006582543.1; XM_006582480.2.
DR   AlphaFoldDB; I1KCV2; -.
DR   SMR; I1KCV2; -.
DR   PaxDb; 3847-GLYMA06G21100-1; -.
DR   EnsemblPlants; KRH54580; KRH54580; GLYMA_06G196000.
DR   GeneID; 102668293; -.
DR   Gramene; KRH54580; KRH54580; GLYMA_06G196000.
DR   KEGG; gmx:102668293; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_0_2_1; -.
DR   InParanoid; I1KCV2; -.
DR   OMA; WEEKIML; -.
DR   OrthoDB; 460923at2759; -.
DR   Proteomes; UP000008827; Chromosome 6.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 3.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 3.
DR   Pfam; PF13041; PPR_2; 1.
DR   PROSITE; PS51375; PPR; 2.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          143..177
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          245..275
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   448 AA;  50563 MW;  1FA42E249FEC23E2 CRC64;
     MTHLKLKWFS ILLRRSVNKL VHRPMSTWHH KAETPISLKP PKPNQTLKNH LECNRHAKVL
     LLFRSFLRKK PTLNLIDSFS LLYALKACNH KHPSTQGKQL HTLIIKLGYQ PIVQLQTTLL
     KTYAQRSNLR DAHQVFDEIP AKNIICWTSL ISAYVDNHKP GRALQLFREM QMNNVEPDQV
     TVTVALSACA ETGALKMGEW IHGFVRRKQV MNRDLCLDNA LINMYAKCGD VVRARKVFDG
     MRNKDVTTWT SMIVGHAVHG QAREALQLFL EMSARRDKDD CVMTPNDVTF IGVLMACSHA
     GLVEEGKLHF RSMSEVYGIQ PREAHFGCMV DLLCRGGHLR DAYDFIIEML VPPNAVVWRT
     LLGACSVHGE LELAAEVRQK LLKLDPGYVG DSVAMSNIYA NKGMWNNKIV VRNQIKHSRA
     PGCSSIEVGS GAGEFVTSDD DHPLMTDV
//
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