ID I1KQC3_SOYBN Unreviewed; 647 AA.
AC I1KQC3;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 27-MAR-2024, entry version 73.
DE RecName: Full=PAS domain-containing protein {ECO:0000259|PROSITE:PS50112};
GN Name=100812253 {ECO:0000313|EnsemblPlants:KRH41723};
GN ORFNames=GLYMA_08G046500 {ECO:0000313|EMBL:KRH41723.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH41723};
RN [1] {ECO:0000313|EMBL:KRH41723.1, ECO:0000313|EnsemblPlants:KRH41723}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH41723};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH41723.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH41723}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH41723};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH41723.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH41723.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC {ECO:0000256|ARBA:ARBA00004906}.
CC -!- SIMILARITY: Belongs to the ADAGIO family.
CC {ECO:0000256|ARBA:ARBA00007833}.
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DR EMBL; CM000841; KRH41723.1; -; Genomic_DNA.
DR RefSeq; XP_003530924.2; XM_003530876.3.
DR AlphaFoldDB; I1KQC3; -.
DR SMR; I1KQC3; -.
DR STRING; 3847.I1KQC3; -.
DR PaxDb; 3847-GLYMA08G05130-1; -.
DR EnsemblPlants; KRH41723; KRH41723; GLYMA_08G046500.
DR GeneID; 100812253; -.
DR Gramene; KRH41723; KRH41723; GLYMA_08G046500.
DR KEGG; gmx:100812253; -.
DR eggNOG; ENOG502QWBU; Eukaryota.
DR HOGENOM; CLU_033494_1_0_1; -.
DR InParanoid; I1KQC3; -.
DR OMA; HIHNIVE; -.
DR OrthoDB; 450390at2759; -.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000008827; Chromosome 8.
DR ExpressionAtlas; I1KQC3; baseline and differential.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0019005; C:SCF ubiquitin ligase complex; IBA:GO_Central.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0007623; P:circadian rhythm; IBA:GO_Central.
DR GO; GO:0016567; P:protein ubiquitination; IEA:UniProtKB-UniPathway.
DR GO; GO:0009637; P:response to blue light; IBA:GO_Central.
DR CDD; cd22154; F-box_AtADO-like; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 1.20.1280.50; -; 1.
DR Gene3D; 2.120.10.80; Kelch-type beta propeller; 2.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR011043; Gal_Oxase/kelch_b-propeller.
DR InterPro; IPR015915; Kelch-typ_b-propeller.
DR InterPro; IPR011498; Kelch_2.
DR InterPro; IPR001610; PAC.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR46175:SF2; ADAGIO PROTEIN 3; 1.
DR PANTHER; PTHR46175; BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR; 1.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF07646; Kelch_2; 1.
DR Pfam; PF13415; Kelch_3; 2.
DR Pfam; PF13418; Kelch_4; 1.
DR Pfam; PF13426; PAS_9; 1.
DR SMART; SM00086; PAC; 1.
DR SUPFAM; SSF81383; F-box domain; 1.
DR SUPFAM; SSF50965; Galactose oxidase, central domain; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50112; PAS; 1.
PE 3: Inferred from homology;
KW Biological rhythms {ECO:0000256|ARBA:ARBA00023108};
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Flavoprotein {ECO:0000256|ARBA:ARBA00022630};
KW FMN {ECO:0000256|ARBA:ARBA00022643};
KW Kelch repeat {ECO:0000256|ARBA:ARBA00022441};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786}.
FT DOMAIN 90..145
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT REGION 19..58
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 19..43
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 44..58
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 647 AA; 72324 MW; 58817ADAC429AA97 CRC64;
MGSSCLCSLF IFESDMAMPK EKEDVQNSGK RLKCTRNEEE EKEQYEQVEA DEEEEEEEDS
ELPLKLGLFF YPTIPTSFVV SDALEPDFPI IYVNKVFEIA TGYRADEALG RNCRFLQYRD
RRAQRRHPLV DPVVVSEIRR CLEEGVEFQG ELLNFRKDGT PLVNRVRLTL IHDDDGTVTH
VIGIQLFSEA NIDLNRVSYP VFKETCNQDF DKNGKYTPKS GQSLYSQHQE MCSILQLSDE
VLAHNILSRL TPRDVASIGS VCRRVRQLTK NEHVRKMVCQ NAWGKEVTGT LELMTKKMGW
GRLTRELTTL EAVCWRKLTV GGAVEPSRCN FSACAAGNRL VLFGGEGVDM QPMDDTFVLN
LDAKNPEWRR VSVKSSPPGR WGHTLSCLNG SWLVVFGGCG RQGLLNDVFV LDLDAQQPTW
REVCGGTPPL PRSWHSSCTI EGSKLVVSGG CTDTGVLLSD TYLLDLTTDN PIWREIPTSW
APPSRLGHSL SVYGRTKILM FGGLAKSGHL RLRSGEAYTI DLEDEQPQWR QLEYSAFTGL
ASQSAVVPPP RLDHVAVSMP CGRIIIFGGS IAGLHSPSQL FLLDPSEEKP SWRILNVPGQ
PPKFAWGHST CVVGGTRVLV LGGHTGEEWI LNELHELCLA SRHDSDL
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