ID I1KYD8_SOYBN Unreviewed; 539 AA.
AC I1KYD8;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 24-JAN-2024, entry version 65.
DE RecName: Full=TATA box binding protein associated factor (TAF) histone-like fold domain-containing protein {ECO:0000259|SMART:SM00803};
GN Name=100799998 {ECO:0000313|EnsemblPlants:KRH46261};
GN ORFNames=GLYMA_08G322700 {ECO:0000313|EMBL:KRH46261.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH46261};
RN [1] {ECO:0000313|EMBL:KRH46261.1, ECO:0000313|EnsemblPlants:KRH46261}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH46261};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH46261.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH46261}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH46261};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH46261.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH46261.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TAF6 family.
CC {ECO:0000256|ARBA:ARBA00007688}.
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DR EMBL; CM000841; KRH46261.1; -; Genomic_DNA.
DR RefSeq; XP_003532152.1; XM_003532104.3.
DR AlphaFoldDB; I1KYD8; -.
DR PaxDb; 3847-GLYMA08G43490-1; -.
DR EnsemblPlants; KRH46261; KRH46261; GLYMA_08G322700.
DR GeneID; 100799998; -.
DR Gramene; KRH46261; KRH46261; GLYMA_08G322700.
DR KEGG; gmx:100799998; -.
DR eggNOG; KOG2549; Eukaryota.
DR HOGENOM; CLU_021711_1_0_1; -.
DR OrthoDB; 1529at2759; -.
DR Proteomes; UP000008827; Chromosome 8.
DR ExpressionAtlas; I1KYD8; baseline and differential.
DR GO; GO:0000124; C:SAGA complex; IEA:InterPro.
DR GO; GO:0046695; C:SLIK (SAGA-like) complex; IEA:InterPro.
DR GO; GO:0005669; C:transcription factor TFIID complex; IEA:InterPro.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0016251; F:RNA polymerase II general transcription initiation factor activity; IEA:InterPro.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IEA:InterPro.
DR CDD; cd08050; TAF6C; 1.
DR Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR Gene3D; 1.25.40.770; TAF6, C-terminal HEAT repeat domain; 1.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR037796; TAF6.
DR InterPro; IPR011442; TAF6_C.
DR InterPro; IPR046344; TAF6_C_sf.
DR InterPro; IPR004823; TAF_TATA-bd_Histone-like_dom.
DR PANTHER; PTHR10221; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6; 1.
DR PANTHER; PTHR10221:SF9; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6; 1.
DR Pfam; PF02969; TAF; 1.
DR Pfam; PF07571; TAF6_C; 1.
DR SMART; SM00803; TAF; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
DR SUPFAM; SSF47113; Histone-fold; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 2..68
FT /note="TATA box binding protein associated factor (TAF)
FT histone-like fold"
FT /evidence="ECO:0000259|SMART:SM00803"
SQ SEQUENCE 539 AA; 60012 MW; ED8427BDA58D1DDE CRC64;
MSFVPKETIE VIAQSIGITN LSPDVALALA PDLEYRIREI MQESVKCMRH SMRTFLTTED
VDTALALRNL EPIYGSTSND PPQFKRAAGH KDLFYIDDKD VDIKDIIEAP LPKAPLDTSI
TSHWLAIEGV QPAIPENAPV EAPSEIRKSE YKEDGLPVDV KLPVKHLITR ELQLYYEKIT
DLTLNKPGSI PFRRALVSLA TDSGLHPLVP YFTFFVADEV AQNLNNLAVL FALMRLVRSL
LQNSQIHIEL YLHQLMPPII TCIVAKRIGN RLSDDHWELR NFSANLVASI CQRFGHIYHN
LQPRVTKTFL HSFLDPTKAL PQHYGAIKGI EALGSRLIRL LILPNLEPYL HLLEPEMQPE
KQKNEMKRHE AWQVYGALLG AAGQCVHEKV KMFSNLFSPP TRVTSRGSGK AVIAMSGKRK
ASTDNLMQQQ QQLPPMKKLA TDGPGGVVAM NSMLVDMQGS TGGYSSMMGV SSMSMARQIS
IDNVPGREVG DQQRKLSSTL AQAWKDDIDT GNLVSSVVEL FGESVLPFVV SNPEACMFL
//
