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Database: UniProt
Entry: I1L0Y5_SOYBN
LinkDB: I1L0Y5_SOYBN
Original site: I1L0Y5_SOYBN 
ID   I1L0Y5_SOYBN            Unreviewed;       542 AA.
AC   I1L0Y5;
DT   13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT   09-JAN-2013, sequence version 2.
DT   08-NOV-2023, entry version 62.
DE   RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN   Name=100788229 {ECO:0000313|EnsemblPlants:KRH37086};
GN   ORFNames=GLYMA_09G043600 {ECO:0000313|EMBL:KRH37086.1};
OS   Glycine max (Soybean) (Glycine hispida).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC   Glycine subgen. Soja.
OX   NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH37086.1};
RN   [1] {ECO:0000313|EMBL:KRH37086.1, ECO:0000313|EnsemblPlants:KRH37086}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH37086};
RC   TISSUE=Callus {ECO:0000313|EMBL:KRH37086.1};
RX   PubMed=20075913; DOI=10.1038/nature08670;
RA   Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA   Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA   Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA   Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA   Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA   Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA   Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA   Stacey G., Shoemaker R.C., Jackson S.A.;
RT   "Genome sequence of the palaeopolyploid soybean.";
RL   Nature 463:178-183(2010).
RN   [2] {ECO:0000313|EnsemblPlants:KRH37086}
RP   IDENTIFICATION.
RC   STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH37086};
RG   EnsemblPlants;
RL   Submitted (FEB-2018) to UniProtKB.
RN   [3] {ECO:0000313|EMBL:KRH37086.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Callus {ECO:0000313|EMBL:KRH37086.1};
RA   Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA   Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA   Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA   Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA   Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA   Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA   Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA   Jackson S.;
RT   "WGS assembly of Glycine max.";
RL   Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC       {ECO:0000256|ARBA:ARBA00006643}.
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DR   EMBL; CM000842; KRH37086.1; -; Genomic_DNA.
DR   RefSeq; XP_006586917.1; XM_006586854.2.
DR   AlphaFoldDB; I1L0Y5; -.
DR   SMR; I1L0Y5; -.
DR   PaxDb; 3847-GLYMA09G04890-1; -.
DR   EnsemblPlants; KRH37086; KRH37086; GLYMA_09G043600.
DR   GeneID; 100788229; -.
DR   Gramene; KRH37086; KRH37086; GLYMA_09G043600.
DR   KEGG; gmx:100788229; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_37_1_1; -.
DR   InParanoid; I1L0Y5; -.
DR   OMA; VSIWNAM; -.
DR   OrthoDB; 344102at2759; -.
DR   Proteomes; UP000008827; Chromosome 9.
DR   GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 2.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 4.
DR   Pfam; PF13041; PPR_2; 1.
DR   PROSITE; PS51375; PPR; 2.
PE   3: Inferred from homology;
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        69..89
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   REPEAT          137..171
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          238..272
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          450..542
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   542 AA;  61579 MW;  85D2FE5ACC4DBD9E CRC64;
     MKCDARMIRL RHGANKFGCF GKSWTNVRPS FHSLSYSFPA TDPTVLHRVL ERCRVSTDLK
     TATKTHARVV VLGFATYPSL VASLISTYAQ CHRPHIALHV FSRILDLFSM NLVIESLVKG
     GQCDIAKKVF GKMSVRDVVT WNSMIGGYVR NLRFFDALSI FRRMLSAKVE PDGFTFASVV
     TACARLGALG NAKWVHGLMV EKRVELNYIL SAALIDMYAK CGRIDVSRQV FEEVARDHVS
     VWNAMISGLA IHGLAMDATL VFSRMEMEHV LPDSITFIGI LTACSHCGLV EEGRKYFGMM
     QNRFMIQPQL EHYGTMVDLL GRAGLMEEAY AVIKEMRMEP DIVIWRALLS ACRIHRKKEL
     GEVAIANISR LESGDFVLLS NMYCSLNNWD GAERVRRMMK TRGVRKSRGK SWVELGDGIH
     QFNAAYQSHP EMKSIYRVLE GLIQRAKLEG FTPLTDLVLM DVSEEEKEEN LMFHSEKLAM
     AYAVLKTSPG TKIRISKNLR ICLDCHNWIK IVSKILNRKI IVRDRIRFHQ FEGGVCSCKD
     YW
//
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