ID I1L0Y5_SOYBN Unreviewed; 542 AA.
AC I1L0Y5;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 08-NOV-2023, entry version 62.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN Name=100788229 {ECO:0000313|EnsemblPlants:KRH37086};
GN ORFNames=GLYMA_09G043600 {ECO:0000313|EMBL:KRH37086.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH37086.1};
RN [1] {ECO:0000313|EMBL:KRH37086.1, ECO:0000313|EnsemblPlants:KRH37086}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH37086};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH37086.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH37086}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH37086};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH37086.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH37086.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM000842; KRH37086.1; -; Genomic_DNA.
DR RefSeq; XP_006586917.1; XM_006586854.2.
DR AlphaFoldDB; I1L0Y5; -.
DR SMR; I1L0Y5; -.
DR PaxDb; 3847-GLYMA09G04890-1; -.
DR EnsemblPlants; KRH37086; KRH37086; GLYMA_09G043600.
DR GeneID; 100788229; -.
DR Gramene; KRH37086; KRH37086; GLYMA_09G043600.
DR KEGG; gmx:100788229; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_1_1; -.
DR InParanoid; I1L0Y5; -.
DR OMA; VSIWNAM; -.
DR OrthoDB; 344102at2759; -.
DR Proteomes; UP000008827; Chromosome 9.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR046960; PPR_At4g14850-like_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 2.
DR PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 1.
DR PROSITE; PS51375; PPR; 2.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 69..89
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT REPEAT 137..171
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 238..272
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 450..542
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 542 AA; 61579 MW; 85D2FE5ACC4DBD9E CRC64;
MKCDARMIRL RHGANKFGCF GKSWTNVRPS FHSLSYSFPA TDPTVLHRVL ERCRVSTDLK
TATKTHARVV VLGFATYPSL VASLISTYAQ CHRPHIALHV FSRILDLFSM NLVIESLVKG
GQCDIAKKVF GKMSVRDVVT WNSMIGGYVR NLRFFDALSI FRRMLSAKVE PDGFTFASVV
TACARLGALG NAKWVHGLMV EKRVELNYIL SAALIDMYAK CGRIDVSRQV FEEVARDHVS
VWNAMISGLA IHGLAMDATL VFSRMEMEHV LPDSITFIGI LTACSHCGLV EEGRKYFGMM
QNRFMIQPQL EHYGTMVDLL GRAGLMEEAY AVIKEMRMEP DIVIWRALLS ACRIHRKKEL
GEVAIANISR LESGDFVLLS NMYCSLNNWD GAERVRRMMK TRGVRKSRGK SWVELGDGIH
QFNAAYQSHP EMKSIYRVLE GLIQRAKLEG FTPLTDLVLM DVSEEEKEEN LMFHSEKLAM
AYAVLKTSPG TKIRISKNLR ICLDCHNWIK IVSKILNRKI IVRDRIRFHQ FEGGVCSCKD
YW
//