ID I1LQK6_SOYBN Unreviewed; 255 AA.
AC I1LQK6;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 24-JAN-2024, entry version 59.
DE RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100306428 {ECO:0000313|EnsemblPlants:KRH24727};
GN ORFNames=GLYMA_12G058700 {ECO:0000313|EMBL:KRH24725.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH24727};
RN [1] {ECO:0000313|EMBL:KRH24725.1, ECO:0000313|EnsemblPlants:KRH24727}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH24727};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH24725.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH24727}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH24727};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH24725.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH24725.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000845; KRH24725.1; -; Genomic_DNA.
DR EMBL; CM000845; KRH24726.1; -; Genomic_DNA.
DR EMBL; CM000845; KRH24727.1; -; Genomic_DNA.
DR RefSeq; XP_006591821.1; XM_006591758.2.
DR AlphaFoldDB; I1LQK6; -.
DR SMR; I1LQK6; -.
DR STRING; 3847.I1LQK6; -.
DR PaxDb; 3847-GLYMA12G06260-1; -.
DR EnsemblPlants; KRH24725; KRH24725; GLYMA_12G058700.
DR EnsemblPlants; KRH24726; KRH24726; GLYMA_12G058700.
DR EnsemblPlants; KRH24727; KRH24727; GLYMA_12G058700.
DR GeneID; 100306428; -.
DR Gramene; KRH24725; KRH24725; GLYMA_12G058700.
DR Gramene; KRH24726; KRH24726; GLYMA_12G058700.
DR Gramene; KRH24727; KRH24727; GLYMA_12G058700.
DR eggNOG; ENOG502QPMB; Eukaryota.
DR HOGENOM; CLU_077248_1_0_1; -.
DR InParanoid; I1LQK6; -.
DR OMA; SSPFVEC; -.
DR OrthoDB; 1065837at2759; -.
DR Proteomes; UP000008827; Chromosome 12.
DR ExpressionAtlas; I1LQK6; baseline and differential.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR044795; THA8L-like.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 1.
DR PANTHER; PTHR46870; PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC; 1.
DR PANTHER; PTHR46870:SF2; PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC; 1.
DR Pfam; PF13041; PPR_2; 1.
DR PROSITE; PS51375; PPR; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 140..174
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 175..209
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 255 AA; 29792 MW; 46F22C5ECCF7A1EC CRC64;
MASRSFFKNL KNRDLASLLL VEFTRSSKPI KHISSTSSPF VECNSFKTAS CFRQYHDGRP
RGPLWKGKKL IGKEALFVIS GFKRFNDDED KLHKFIKTHV LRLLKMDMIA VLTELERQEQ
VSLALMMFKV MQKQDWYKPD AYLYKDLIIA LARAKKMDEV LQLWESMREE NLFPDSQTYT
EVIRGFLNYG SPADAMNIYE DMKNSPDPPE ELPFRILLKG LLPHPLLRNK VKQDFEEIFP
DSSIYDPPQE IFGAR
//
