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Entry: I1LRC5_SOYBN
LinkDB: I1LRC5_SOYBN
Original site: I1LRC5_SOYBN 
ID   I1LRC5_SOYBN            Unreviewed;       495 AA.
AC   I1LRC5;
DT   13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT   09-JAN-2013, sequence version 2.
DT   24-JAN-2024, entry version 65.
DE   RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=GLYMA_12G085400 {ECO:0000313|EMBL:KRH25167.1};
OS   Glycine max (Soybean) (Glycine hispida).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC   Glycine subgen. Soja.
OX   NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH25167};
RN   [1] {ECO:0000313|EMBL:KRH25167.1, ECO:0000313|EnsemblPlants:KRH25167}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH25167};
RC   TISSUE=Callus {ECO:0000313|EMBL:KRH25167.1};
RX   PubMed=20075913; DOI=10.1038/nature08670;
RA   Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA   Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA   Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA   Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA   Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA   Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA   Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA   Stacey G., Shoemaker R.C., Jackson S.A.;
RT   "Genome sequence of the palaeopolyploid soybean.";
RL   Nature 463:178-183(2010).
RN   [2] {ECO:0000313|EnsemblPlants:KRH25167}
RP   IDENTIFICATION.
RC   STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH25167};
RG   EnsemblPlants;
RL   Submitted (FEB-2018) to UniProtKB.
RN   [3] {ECO:0000313|EMBL:KRH25167.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Callus {ECO:0000313|EMBL:KRH25167.1};
RA   Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA   Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA   Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA   Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA   Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA   Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA   Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA   Jackson S.;
RT   "WGS assembly of Glycine max.";
RL   Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CM000845; KRH25167.1; -; Genomic_DNA.
DR   RefSeq; XP_014620093.1; XM_014764607.1.
DR   AlphaFoldDB; I1LRC5; -.
DR   SMR; I1LRC5; -.
DR   STRING; 3847.I1LRC5; -.
DR   PaxDb; 3847-GLYMA12G09040-1; -.
DR   EnsemblPlants; KRH25167; KRH25167; GLYMA_12G085400.
DR   Gramene; KRH25167; KRH25167; GLYMA_12G085400.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_20_1; -.
DR   InParanoid; I1LRC5; -.
DR   OMA; CPRQIAA; -.
DR   OrthoDB; 597206at2759; -.
DR   Proteomes; UP000008827; Chromosome 12.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR   GO; GO:0006397; P:mRNA processing; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 7.
DR   PANTHER; PTHR47934:SF6; MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1-RELATED; 1.
DR   PANTHER; PTHR47934; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL; 1.
DR   Pfam; PF12854; PPR_1; 2.
DR   Pfam; PF13041; PPR_2; 3.
DR   SUPFAM; SSF81901; HCP-like; 1.
DR   PROSITE; PS51375; PPR; 7.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          173..203
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          207..241
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          242..276
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          277..311
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          312..346
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          348..382
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          383..417
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   495 AA;  56445 MW;  21DB0F20C631C8A8 CRC64;
     MFLFQKGSHL HRLLLSKKYY YHFPLPRNAV TIADSVEHPS DATIAKLVLE SDPRTVSEAL
     TKPTIQWTPD LVNKVMKRLW NHGPKALQFF KHLDRHHPSY THSPSSFDHA VDIAARMRDF
     NSAWALVGRM RSLRLGPSPK TLAILAERYA SNGKPHRAVR TFLSMAEHGI RQDLHSFNTL
     LDILCKSKRV ETAHSLLKTL TSRFRPDTVT YNILANGYCL IKRTPMALRV LKEMVQRGIE
     PTMVTYNTML KGYFRSNQIK EAWEFYLEMK KRKCEIDVVT YTTVIHGFGV AGDVKKAKRV
     FHEMVKEGVV PNVATYNALI QVLCKKDSVE NAVVVFEEMA REGVCVPNVV TYNVVIRGLC
     HVGDMERALG FMERMGEHGL RACVQTYNVV IRYFCDAGEV EKALEVFGKM GDGSCLPNLD
     TYNVLISAMF VRKKSEDLVV AGKLLMDMVD RGFLPRKFTF NRVLNGLVIT GNQDFAKEIL
     RMQSRCGRIV RRLKL
//
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