ID I1LVM1_SOYBN Unreviewed; 699 AA.
AC I1LVM1;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 24-JAN-2024, entry version 78.
DE RecName: Full=Pathogenesis-related homeodomain protein {ECO:0008006|Google:ProtNLM};
GN Name=100815437 {ECO:0000313|EnsemblPlants:KRH19096};
GN ORFNames=GLYMA_13G100500 {ECO:0000313|EMBL:KRH19095.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH19096};
RN [1] {ECO:0000313|EMBL:KRH19095.1, ECO:0000313|EnsemblPlants:KRH19096}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH19096};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH19095.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH19096}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH19096};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH19095.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH19095.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PROSITE-ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
CC -!- SIMILARITY: Belongs to the PHD-associated homeobox family.
CC {ECO:0000256|ARBA:ARBA00007427}.
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DR EMBL; CM000846; KRH19095.1; -; Genomic_DNA.
DR EMBL; CM000846; KRH19096.1; -; Genomic_DNA.
DR RefSeq; XP_003543734.1; XM_003543686.3.
DR RefSeq; XP_006593511.1; XM_006593448.2.
DR AlphaFoldDB; I1LVM1; -.
DR SMR; I1LVM1; -.
DR STRING; 3847.I1LVM1; -.
DR PaxDb; 3847-GLYMA13G00540-1; -.
DR EnsemblPlants; KRH19095; KRH19095; GLYMA_13G100500.
DR EnsemblPlants; KRH19096; KRH19096; GLYMA_13G100500.
DR GeneID; 100815437; -.
DR Gramene; KRH19095; KRH19095; GLYMA_13G100500.
DR Gramene; KRH19096; KRH19096; GLYMA_13G100500.
DR KEGG; gmx:100815437; -.
DR eggNOG; KOG4299; Eukaryota.
DR InParanoid; I1LVM1; -.
DR OrthoDB; 473783at2759; -.
DR Proteomes; UP000008827; Chromosome 13.
DR ExpressionAtlas; I1LVM1; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006325; P:chromatin organization; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IBA:GO_Central.
DR CDD; cd00086; homeodomain; 1.
DR CDD; cd15504; PHD_PRHA_like; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR045876; PRHA-like_PHD-finger.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR12628:SF10; C. ELEGANS HOMEOBOX; 1.
DR PANTHER; PTHR12628; POLYCOMB-LIKE TRANSCRIPTION FACTOR; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Homeobox {ECO:0000256|ARBA:ARBA00023155, ECO:0000256|PROSITE-
KW ProRule:PRU00108}; Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 222..279
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 475..535
FT /note="Homeobox"
FT /evidence="ECO:0000259|PROSITE:PS50071"
FT DNA_BIND 477..536
FT /note="Homeobox"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00108"
FT REGION 1..134
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 318..369
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 453..474
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 536..614
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 16..30
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 57..74
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 96..113
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 347..369
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 542..559
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 560..588
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 699 AA; 79482 MW; 880EBE8851FAF05B CRC64;
MRDSEKKLNN KGSKKSSPLK VRKKGQGKKE KVKVGSKSHT KNAGTDISRK RVISSLKVKG
PRKDSSDKKL ITGKKLPMKN KKSSQKSSSK LQGKKASLSS RKEGGDADGA VKLQKMKRKR
KKKRPRNNVD LDDPSRLQRR TRYLLIKMKL EQNLIDAYSG EGWKGQSREK IRPEKELQRA
RKQILKCRLG IRDAIRQLDS LGSLSSIEDS AIALDGSVCH EHILCVKCKV HEELPDNDII
LCNGKCERAF HQKCLDPPLD TENISPGEQG WFCKFCECKM EILEATNAHL GTHFSLHSTW
QDVFKEEAAI PDGEIALLNP EQEWPSDDSE DDDYDPERKE DSHNINIEGT NDSASEDLSS
STSLCSSDGE CSPIDGVSHE YFSVNSSIDS DESEDKACGR RQRKAVDYKK LYDEMFGKDA
PAYELLSEDE DWGPGKRKRR EKESDAVDSL MTLHESENRH PNNEHNMTSK DSSSIKIKRH
CFRIPRDAVE RLRQVFAENE LPPRSIREGL SKELGLDTEK VSKWFKNARY LALKNRKHQA
EGVADQLQSI TSTKNRLQKQ ENVDPLKSKT PKITRTHSQK DVKNVNGRKK MKSSNKKRQP
EIPPPPGENG KKDFMEISDD VSLKKLLKKR KKRLINFTFG GDSQLAELEF ERLSELKTKV
DSMKQKLTAI QNYRVKGSPY SNEPSIVYVP TAVLREKVE
//
