ID I1MFR2_SOYBN Unreviewed; 691 AA.
AC I1MFR2;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 27-MAR-2024, entry version 61.
DE RecName: Full=Smr domain-containing protein {ECO:0000259|PROSITE:PS50828};
GN Name=100813509 {ECO:0000313|EnsemblPlants:KRH11577};
GN ORFNames=GLYMA_15G118100 {ECO:0000313|EMBL:KRH11577.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH11577.1};
RN [1] {ECO:0000313|EMBL:KRH11577.1, ECO:0000313|EnsemblPlants:KRH11577}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH11577};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH11577.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH11577}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH11577};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH11577.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH11577.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; CM000848; KRH11577.1; -; Genomic_DNA.
DR RefSeq; XP_006597613.1; XM_006597550.2.
DR AlphaFoldDB; I1MFR2; -.
DR SMR; I1MFR2; -.
DR PaxDb; 3847-GLYMA15G12500-1; -.
DR EnsemblPlants; KRH11577; KRH11577; GLYMA_15G118100.
DR GeneID; 100813509; -.
DR Gramene; KRH11577; KRH11577; GLYMA_15G118100.
DR KEGG; gmx:100813509; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_018319_0_0_1; -.
DR InParanoid; I1MFR2; -.
DR OMA; LEMEAMF; -.
DR OrthoDB; 940720at2759; -.
DR Proteomes; UP000008827; Chromosome 15.
DR GO; GO:0009570; C:chloroplast stroma; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0042134; F:rRNA primary transcript binding; IBA:GO_Central.
DR GO; GO:0045727; P:positive regulation of translation; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR002625; Smr_dom.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 8.
DR PANTHER; PTHR47447; OS03G0856100 PROTEIN; 1.
DR PANTHER; PTHR47447:SF10; PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 1.
DR SMART; SM00463; SMR; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 8.
DR PROSITE; PS50828; SMR; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 165..199
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 200..234
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 270..304
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 305..339
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 340..374
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 375..409
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 411..445
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 446..480
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 593..677
FT /note="Smr"
FT /evidence="ECO:0000259|PROSITE:PS50828"
SQ SEQUENCE 691 AA; 76937 MW; 6C550747A47D969A CRC64;
MAQSFLLCCS SSSFPPHPPS SSSFHYRQKI TNASSVPSYS SRHFKLPNFS SSHQPKTLLQ
DAKLDDPNAK SSPLSKTSIW VNPKSPRAKH LWKNSYHARS SSLTKLAKSL DSCNPTQEHV
SEILKVLGDS VLEPDAVFIL NSMVNPYTAL LAVEYFKQKV KSVRHVILYN VTLKLFRKVK
DFEGAEKLFD EMLHRGVNPN LITFSTMISC ASVCSLPHKA VKWFEMMPSF GCEPDNNVCS
SMIYAYTRTG NTDMALRLYD RAKAGKWHVD TAVFSGLIKM YGVSGNYVGC LNVYNDMKVL
GAKPNLTTYN ALLYAMGRAK RARDAKAIYG EMISNGLSPN WPTYAALLQA YCRARFNRDA
LNVYKEMKEK GKDLDILLYN MLFDMCANVG CVDEAVKIFE HMKSSGTCPP DSFTYASLIN
MYSSIGKILE MEAMFNEMME SGFEPNIIVL TSLVHCYGKA KRTDDVVKIF NQLMDLGISP
DGRFCDCLLY AMTQVPKEEL GKLSGCVEKA NPKLGSVLRY IMEKQEGGGD FRTEASELFN
STEADVKKSM CNCLIDLCVS LDVPDRARDL LDLGLTLEIY PDIQSRSQAK WSLHLKRLSV
GAALTALSVW ISDLSKALEL GEELPPLLGI NTGGGKHRFS DKVLPTVFES YLKELKAPFH
KDANKAGWFL ATSEAATSWL QSRGSTVALP Q
//
