ID I1MQA1_SOYBN Unreviewed; 522 AA.
AC I1MQA1;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 61.
DE RecName: Full=Pentatricopeptide repeat-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100806937 {ECO:0000313|EnsemblPlants:KRH09249};
GN ORFNames=GLYMA_16G206000 {ECO:0000313|EMBL:KRH09249.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH09249};
RN [1] {ECO:0000313|EMBL:KRH09249.1, ECO:0000313|EnsemblPlants:KRH09249}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH09249};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH09249.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH09249}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH09249};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH09249.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH09249.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000849; KRH09249.1; -; Genomic_DNA.
DR RefSeq; XP_003549152.1; XM_003549104.3.
DR AlphaFoldDB; I1MQA1; -.
DR SMR; I1MQA1; -.
DR STRING; 3847.I1MQA1; -.
DR PaxDb; 3847-GLYMA16G33110-1; -.
DR EnsemblPlants; KRH09249; KRH09249; GLYMA_16G206000.
DR GeneID; 100806937; -.
DR Gramene; KRH09249; KRH09249; GLYMA_16G206000.
DR KEGG; gmx:100806937; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_2_1; -.
DR InParanoid; I1MQA1; -.
DR OMA; QNAYKTP; -.
DR OrthoDB; 773687at2759; -.
DR Proteomes; UP000008827; Chromosome 16.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR046960; PPR_At4g14850-like_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 4.
DR PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 170..204
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 302..336
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 522 AA; 58252 MW; 8FF2896CEA6F1A13 CRC64;
MKPNLNEHVL DTLSKSNHLN HLKQLQAYLT TLGHAHTHFY AFKLIRFCTL TLSNLTYARL
IFDHIPSLNT HLFTAMITAY AAHPATHPSA LSLFRHMLRS QPPRPNHFIF PHALKTCPES
CAAESLHAQI VKSGFHEYPV VQTALVDSYS KVSGGLGNAK KVFDEMSDRS VVSFTAMVSG
FARVGDVESA VRVFGEMLDR DVPSWNALIA GCTQNGAFTQ GIELFRRMVF ECNRPNGVTV
VCALSACGHM GMLQLGRWIH GYVYKNGLAF DSFVLNALVD MYGKCGSLGK ARKVFEMNPE
KGLTSWNSMI NCFALHGQSD SAIAIFEQMV EGGGGVRPDE VTFVGLLNAC THGGLVEKGY
WYFEMMVQEY GIEPQIEHYG CLIDLLGRAG RFDEAMDVVK GMSMEPDEVV WGSLLNGCKV
HGRTDLAEFA AKKLIEIDPH NGGYRIMLAN VYGELGKWDE VRNVWRTLKQ QKSYKVPGCS
WIEVDDQVHQ FYSLDKSNPK TEDLYIVLES LVGFRNEVMG EP
//