ID I1NBN5_SOYBN Unreviewed; 1026 AA.
AC I1NBN5;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 75.
DE RecName: Full=Protein transport protein Sec24-like {ECO:0008006|Google:ProtNLM};
GN Name=100791083 {ECO:0000313|EnsemblPlants:KRG96684};
GN ORFNames=GLYMA_19G226200 {ECO:0000313|EMBL:KRG96683.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRG96684};
RN [1] {ECO:0000313|EMBL:KRG96683.1, ECO:0000313|EnsemblPlants:KRG96684}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRG96684};
RC TISSUE=Callus {ECO:0000313|EMBL:KRG96683.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRG96684}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRG96684};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRG96683.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRG96683.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the SEC23/SEC24 family. SEC24 subfamily.
CC {ECO:0000256|ARBA:ARBA00008334}.
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DR EMBL; CM000852; KRG96683.1; -; Genomic_DNA.
DR EMBL; CM000852; KRG96684.1; -; Genomic_DNA.
DR RefSeq; XP_003553695.1; XM_003553647.3.
DR AlphaFoldDB; I1NBN5; -.
DR SMR; I1NBN5; -.
DR STRING; 3847.I1NBN5; -.
DR PaxDb; 3847-GLYMA19G41400-4; -.
DR EnsemblPlants; KRG96683; KRG96683; GLYMA_19G226200.
DR EnsemblPlants; KRG96684; KRG96684; GLYMA_19G226200.
DR GeneID; 100791083; -.
DR Gramene; KRG96683; KRG96683; GLYMA_19G226200.
DR Gramene; KRG96684; KRG96684; GLYMA_19G226200.
DR KEGG; gmx:100791083; -.
DR eggNOG; KOG1985; Eukaryota.
DR HOGENOM; CLU_004589_4_1_1; -.
DR InParanoid; I1NBN5; -.
DR OMA; AVECSKQ; -.
DR OrthoDB; 977017at2759; -.
DR Proteomes; UP000008827; Chromosome 19.
DR GO; GO:0030127; C:COPII vesicle coat; IBA:GO_Central.
DR GO; GO:0070971; C:endoplasmic reticulum exit site; IBA:GO_Central.
DR GO; GO:0005794; C:Golgi apparatus; IEA:UniProtKB-KW.
DR GO; GO:0000149; F:SNARE binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IBA:GO_Central.
DR GO; GO:0090110; P:COPII-coated vesicle cargo loading; IBA:GO_Central.
DR GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
DR CDD; cd01479; Sec24-like; 1.
DR Gene3D; 2.60.40.1670; beta-sandwich domain of Sec23/24; 1.
DR Gene3D; 1.20.120.730; Sec23/Sec24 helical domain; 1.
DR Gene3D; 3.40.20.10; Severin; 1.
DR Gene3D; 3.40.50.410; von Willebrand factor, type A domain; 1.
DR Gene3D; 2.30.30.380; Zn-finger domain of Sec23/24; 1.
DR InterPro; IPR029006; ADF-H/Gelsolin-like_dom_sf.
DR InterPro; IPR007123; Gelsolin-like_dom.
DR InterPro; IPR036180; Gelsolin-like_dom_sf.
DR InterPro; IPR006900; Sec23/24_helical_dom.
DR InterPro; IPR036175; Sec23/24_helical_dom_sf.
DR InterPro; IPR006896; Sec23/24_trunk_dom.
DR InterPro; IPR012990; Sec23_24_beta_S.
DR InterPro; IPR041742; Sec24-like_trunk_dom.
DR InterPro; IPR036465; vWFA_dom_sf.
DR InterPro; IPR006895; Znf_Sec23_Sec24.
DR InterPro; IPR036174; Znf_Sec23_Sec24_sf.
DR PANTHER; PTHR13803; SEC24-RELATED PROTEIN; 1.
DR PANTHER; PTHR13803:SF39; SECRETORY 24AB, ISOFORM A; 1.
DR Pfam; PF00626; Gelsolin; 1.
DR Pfam; PF08033; Sec23_BS; 1.
DR Pfam; PF04815; Sec23_helical; 1.
DR Pfam; PF04811; Sec23_trunk; 1.
DR Pfam; PF04810; zf-Sec23_Sec24; 1.
DR SUPFAM; SSF81995; beta-sandwich domain of Sec23/24; 1.
DR SUPFAM; SSF82754; C-terminal, gelsolin-like domain of Sec23/24; 1.
DR SUPFAM; SSF81811; Helical domain of Sec23/24; 1.
DR SUPFAM; SSF53300; vWA-like; 1.
DR SUPFAM; SSF82919; Zn-finger domain of Sec23/24; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Golgi apparatus {ECO:0000256|ARBA:ARBA00023034};
KW Protein transport {ECO:0000256|ARBA:ARBA00022927};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transport {ECO:0000256|ARBA:ARBA00022448}.
FT DOMAIN 357..394
FT /note="Zinc finger Sec23/Sec24-type"
FT /evidence="ECO:0000259|Pfam:PF04810"
FT DOMAIN 431..667
FT /note="Sec23/Sec24 trunk"
FT /evidence="ECO:0000259|Pfam:PF04811"
FT DOMAIN 673..757
FT /note="Sec23/Sec24 beta-sandwich"
FT /evidence="ECO:0000259|Pfam:PF08033"
FT DOMAIN 768..871
FT /note="Sec23/Sec24 helical"
FT /evidence="ECO:0000259|Pfam:PF04815"
FT DOMAIN 901..961
FT /note="Gelsolin-like"
FT /evidence="ECO:0000259|Pfam:PF00626"
FT REGION 1..218
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 19..38
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 41..58
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 71..86
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 103..161
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1026 AA; 112580 MW; BC83D3BC5DE78F5F CRC64;
MGTENPGRPT FPPSRPASSP FAAAQTVSPF SSSGPVAGSE PPSFRPSPPA PPPQAATPFS
SAGPAAVRPG APSFRPAPPG RFNDPSVPLP VRPSNASPAA GPFQQFPPAP SFPPTMQPRG
PPLPMGPPSI QSPPSQAQPF PTSLPAQPQM PSVPMGSPPP QSAAPAHLGS NFPPPPTIQP
SFPGYPSKQA GPEMQAPPMH SSFPANQGNF GPVPPAAASP FLSHPGGYVP PPPMAPPLGI
QPMQQPGSVP PMGAVQGLAE DFNALTLQTR PGTMDPLFDA KELPRPLEGD IEPKNLVDMY
PMNCNPRYLR LTTSAVPSSQ SLASRWHLPL GAVVCPLAEP PDGEEVPIVN FAPASVVRCR
RCRTYVNPYM TFTEAGRKFR CNVCTLLNDV PSEYYAQLDA TGKRVDINQR PELTKGTVEF
VAPAEYMVRP PMPPVYFFLI DVSISAVRSG MIEVVANTIK SCLDELPGFP RTQIGFATFD
STIHFYNMKS SLTQPQMLVV SDLDDIFIPL PDDLLVNLSE SRSVVETFLD SLPTMFQDNV
NLESAFGPAL KAAFMVMSQL GGKLLIFQNT LPSLGVGRLK LRGDDSRVYG TDKEHGLRLP
EDPFYKQMAA EFSKYQISTN VYAFSDKYTD IASLGTLAKY TAGQVYYYPA FQSAIHGEKL
RHELRRDLTR ETAWEAVMRI RCAKGVRFTT YHGNFMLRST DLLALPAVDC DKAFAMQLSL
EETLLTTQTM YLQVALLYTA SCGERRIRVH TMAVPVVTEL ADIYRLADTG AIVSLLSRLA
IEKTLSQKLE DARSAVQLRV VKALREYRNL YAVQHRLANR MIYPESLKFL MLYGLALCRS
TALRGGYGDV PLDERCAAGH IMMTVSIRRL LKLLYPSLIR LDEYLLKASV QANDLKSVER
RLPLTGESLD SRGLYIYDDG IRFIIWFGRV ISPDIAKNLL GADFAAELSK TTLSEHDNEM
SRRLVKVLEK LRNTDRAYYQ LCHLVRQGEQ PKEGFLLLAN LVEDQMGGNS GYAEWMLQIS
RQVQQS
//
