ID I1NFE9_SOYBN Unreviewed; 618 AA.
AC I1NFE9;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 62.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN Name=100807903 {ECO:0000313|EnsemblPlants:KRG90760};
GN ORFNames=GLYMA_20G112100 {ECO:0000313|EMBL:KRG90760.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRG90760};
RN [1] {ECO:0000313|EMBL:KRG90760.1, ECO:0000313|EnsemblPlants:KRG90760}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRG90760};
RC TISSUE=Callus {ECO:0000313|EMBL:KRG90760.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRG90760}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRG90760};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRG90760.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRG90760.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM000853; KRG90760.1; -; Genomic_DNA.
DR RefSeq; XP_006605886.1; XM_006605823.2.
DR AlphaFoldDB; I1NFE9; -.
DR SMR; I1NFE9; -.
DR PaxDb; 3847-GLYMA20G24630-1; -.
DR EnsemblPlants; KRG90760; KRG90760; GLYMA_20G112100.
DR GeneID; 100807903; -.
DR Gramene; KRG90760; KRG90760; GLYMA_20G112100.
DR KEGG; gmx:100807903; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_6_1; -.
DR InParanoid; I1NFE9; -.
DR OMA; QLCAKTR; -.
DR OrthoDB; 468363at2759; -.
DR Proteomes; UP000008827; Chromosome 20.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 4.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR PANTHER; PTHR24015:SF1063; OS12G0156900 PROTEIN; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 3.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 108..142
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 209..243
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 311..345
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 527..618
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 618 AA; 70122 MW; 3685DB5CB453089D CRC64;
MKTLRRCERF CNCYGIHIRK LTVISEAKPE SSKVENVVHI DRVSNLHYLL QLCAKTRSSM
GGRACHAQII RIGLEMDILT SNMLINMYSK CSLVDSARKK FNEMPVKSLV SWNTVIGALT
QNAEDREALK LLIQMQREGT PFNEFTISSV LCNCAFKCAI LECMQLHAFS IKAAIDSNCF
VGTALLHVYA KCSSIKDASQ MFESMPEKNA VTWSSMMAGY VQNGFHEEAL LIFRNAQLMG
FDQDPFMISS AVSACAGLAT LIEGKQVHAI SHKSGFGSNI YVSSSLIDMY AKCGCIREAY
LVFQGVLEVR SIVLWNAMIS GFARHARAPE AMILFEKMQQ RGFFPDDVTY VCVLNACSHM
GLHEEGQKYF DLMVRQHNLS PSVLHYSCMI DILGRAGLVH KAYDLIERMP FNATSSMWGS
LLASCKIYGN IEFAEIAAKY LFEMEPNNAG NHILLANIYA ANKKWDEVAR ARKLLRETDV
RKERGTSWIE IKNKIHSFTV GERNHPQIDD IYAKLDNLVV ELKKLNYKVD TSNDLHDVEE
NRKQMLLRHH SEKLAITFGL MCLPRDIPIR IIKNLRICGD CHTFMKLVSK STSREIIVRD
TNRFHHFKDG FCSCGEFW
//
