ID I1P7R5_ORYGL Unreviewed; 600 AA.
AC I1P7R5;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE RecName: Full=HRDC domain-containing protein {ECO:0000259|PROSITE:PS50967};
OS Oryza glaberrima (African rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA03G0041100.1, ECO:0000313|Proteomes:UP000007306};
RN [1] {ECO:0000313|Proteomes:UP000007306}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 96717 {ECO:0000313|Proteomes:UP000007306};
RA Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L.,
RA Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K.,
RA Zuccolo A.;
RT "The complete genome of Oryza glaberrima.";
RL Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:ORGLA03G0041100.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
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DR AlphaFoldDB; I1P7R5; -.
DR STRING; 4538.I1P7R5; -.
DR EnsemblPlants; ORGLA03G0041100.1; ORGLA03G0041100.1; ORGLA03G0041100.
DR Gramene; ORGLA03G0041100.1; ORGLA03G0041100.1; ORGLA03G0041100.
DR eggNOG; KOG2206; Eukaryota.
DR HOGENOM; CLU_010129_4_1_1; -.
DR OMA; VYALHQW; -.
DR Proteomes; UP000007306; Chromosome 3.
DR GO; GO:0000175; F:3'-5'-RNA exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IEA:InterPro.
DR CDD; cd06147; Rrp6p_like_exo; 1.
DR Gene3D; 1.10.150.80; HRDC domain; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR002121; HRDC_dom.
DR InterPro; IPR044876; HRDC_dom_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR045092; Rrp6-like.
DR InterPro; IPR049559; Rrp6p-like_exo.
DR PANTHER; PTHR12124:SF47; EXOSOME COMPONENT 10; 1.
DR PANTHER; PTHR12124; POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF00570; HRDC; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SMART; SM00341; HRDC; 1.
DR SUPFAM; SSF47819; HRDC-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50967; HRDC; 1.
PE 4: Predicted;
FT DOMAIN 361..441
FT /note="HRDC"
FT /evidence="ECO:0000259|PROSITE:PS50967"
FT REGION 1..53
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 567..600
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..22
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 585..600
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 600 AA; 68621 MW; 72CEAD93B18F0E08 CRC64;
MDEFKGPGEK EKEEEAGDKA AAEEAGDGFQ VVRGKKKKRP NGGSASGAGS GTMMAKDKAA
AAAAAEPWTK AKVSFHDPNI PRPQDVYAIR VNNYNVPFDH VWLERTEDGS RPIHPLEKLP
MEQFIDRNVP ESEPVKPADL EDTPFTLVED KNGLADLAKK LKSVNEFAVD LEHNQYRSFQ
GLTCLMQIST RTEDFVVDTL KLRIYIGLYL KEHFKDPTKR KVMHGADRDI MWLQRDFHIY
VCNLFDTGQA SRVLQMERNS LEHLLRHFCG VTANKEYQNA DWRSRPLSDE MIKYAREDTH
YLLYMYDLMR LRLQKESTSD NDLLLEVQKR SNEICLQLYE KELLTDTSYL HIYGLQEHDL
DAKQLAVVYA LHQWRDYIAR EVDESTGYVL PNKALIEIAK KMPTDTAELK RMVKSKYPFV
DENLDQVVGI IWNATESSYA FESRAEQLKK ERLEQLTDRV HTISSPEMKT SMNLSSQIRS
MDKEILSDNI HQQVAQATFQ ELKRPMALGA VGNSTSGGQR DFFGGFSNKS EKMEKAKSYP
AFYYPQLPQY SPEVGYGFQS INRTMAGTAL SPTGNKERDL QNPRRRQSFP PSGNISDTHQ
//
