GenomeNet

Database: UniProt
Entry: I1Q5H0_ORYGL
LinkDB: I1Q5H0_ORYGL
Original site: I1Q5H0_ORYGL 
ID   I1Q5H0_ORYGL            Unreviewed;       157 AA.
AC   I1Q5H0;
DT   13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT   13-JUN-2012, sequence version 1.
DT   24-JAN-2024, entry version 45.
DE   RecName: Full=HMG box domain-containing protein {ECO:0000259|PROSITE:PS50118};
OS   Oryza glaberrima (African rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX   NCBI_TaxID=4538 {ECO:0000313|EnsemblPlants:ORGLA06G0238300.1, ECO:0000313|Proteomes:UP000007306};
RN   [1] {ECO:0000313|Proteomes:UP000007306}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=IRGC 96717 {ECO:0000313|Proteomes:UP000007306};
RA   Wing R.A., Yu Y., Rounsley S., Reddy-Marri P., Goicoechea J.L.,
RA   Sisneros N., Lee S., Song X., Angelova A., Kudrna D.P., de Baynast K.,
RA   Zuccolo A.;
RT   "The complete genome of Oryza glaberrima.";
RL   Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EnsemblPlants:ORGLA06G0238300.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (JUN-2015) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   AlphaFoldDB; I1Q5H0; -.
DR   SMR; I1Q5H0; -.
DR   STRING; 4538.I1Q5H0; -.
DR   EnsemblPlants; ORGLA06G0238300.1; ORGLA06G0238300.1; ORGLA06G0238300.
DR   Gramene; ORGLA06G0238300.1; ORGLA06G0238300.1; ORGLA06G0238300.
DR   eggNOG; KOG0381; Eukaryota.
DR   HOGENOM; CLU_082854_1_1_1; -.
DR   OMA; PLSAYMH; -.
DR   Proteomes; UP000007306; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   CDD; cd22005; HMG-box_AtHMGB1-like; 1.
DR   Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR   InterPro; IPR009071; HMG_box_dom.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   InterPro; IPR031061; HMGB_plant.
DR   PANTHER; PTHR46261; HIGH MOBILITY GROUP B PROTEIN 4-RELATED; 1.
DR   PANTHER; PTHR46261:SF18; HIGH MOBILITY GROUP B PROTEIN 4-RELATED; 1.
DR   Pfam; PF00505; HMG_box; 1.
DR   SMART; SM00398; HMG; 1.
DR   SUPFAM; SSF47095; HMG-box; 1.
DR   PROSITE; PS50118; HMG_BOX_2; 1.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW   Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267}.
FT   DOMAIN          42..111
FT                   /note="HMG box"
FT                   /evidence="ECO:0000259|PROSITE:PS50118"
FT   DNA_BIND        42..111
FT                   /note="HMG box"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT   REGION          1..46
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          109..157
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..41
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        125..157
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   157 AA;  17100 MW;  13F341B84AB2B913 CRC64;
     MKGAKSKGAA KPDAKLAVKS KGAEKPAAKG RKGKAGKDPN KPKRAPSAFF VFMEEFRKEF
     KEKNPKNKSV AAVGKAAGDR WKSLTEADKA PYVAKANKLK AEYNKAIAAY NKGESTAKKA
     PAKEEEEDDE EESDKSKSEV NDEDDDEGSE EDEDDDE
//
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