UniProt: I3R947

Database: UniProt
Entry: I3R947_HALMT

LinkDB:  I3R947_HALMT 
Original site:  I3R947_HALMT

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Gene (2)   
   KEGG GENES (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   EMBL (4)   
Protein domain (2)   
   InterPro (1)   
   Pfam (1)   
Literature (3)   
   PubMed (3)   
All databases (12)   

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ID   I3R947_HALMT            Unreviewed;       218 AA.
AC   I3R947;
DT   05-SEP-2012, integrated into UniProtKB/TrEMBL.
DT   05-SEP-2012, sequence version 1.
DT   27-MAR-2024, entry version 56.
DE   SubName: Full=Transcription regulator {ECO:0000313|EMBL:AFK20757.1};
DE   SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:AHZ23991.1};
GN   OrderedLocusNames=HFX_4063 {ECO:0000313|EMBL:AFK20757.1};
GN   ORFNames=BM92_19485 {ECO:0000313|EMBL:AHZ23991.1}, C439_16688
GN   {ECO:0000313|EMBL:ELZ97572.1}, E6P09_19170
GN   {ECO:0000313|EMBL:QCQ77434.1};
OS   Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC
OS   14739 / NCIMB 2177 / R-4) (Halobacterium mediterranei).
OG   Plasmid HMPLAS3 {ECO:0000313|EMBL:AHZ23991.1,
OG   ECO:0000313|Proteomes:UP000027075},
OG   Plasmid pHM100 {ECO:0000313|EMBL:AFK20757.1,
OG   ECO:0000313|Proteomes:UP000006469}, and
OG   Plasmid pHME132 {ECO:0000313|EMBL:QCQ77434.1,
OG   ECO:0000313|Proteomes:UP000299011}.
OC   Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales;
OC   Haloferacaceae; Haloferax.
OX   NCBI_TaxID=523841 {ECO:0000313|EMBL:AFK20757.1, ECO:0000313|Proteomes:UP000006469};
RN   [1] {ECO:0000313|EMBL:AFK20757.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=CGMCC 1.2087 {ECO:0000313|EMBL:AFK20757.1};
RX   PubMed=22247127; DOI=10.1128/AEM.07114-11;
RA   Cai S., Cai L., Liu H., Liu X., Han J., Zhou J., Xiang H.;
RT   "Identification of the haloarchaeal phasin (PhaP) that functions in
RT   polyhydroxyalkanoate accumulation and granule formation in Haloferax
RT   mediterranei.";
RL   Appl. Environ. Microbiol. 78:1946-1952(2012).
RN   [2] {ECO:0000313|EMBL:AFK20757.1, ECO:0000313|Proteomes:UP000006469}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 /
RC   R-4 {ECO:0000313|Proteomes:UP000006469}, and CGMCC 1.2087
RC   {ECO:0000313|EMBL:AFK20757.1};
RC   PLASMID=pHM100 {ECO:0000313|Proteomes:UP000006469};
RX   PubMed=22843593; DOI=10.1128/JB.00880-12;
RA   Han J., Zhang F., Hou J., Liu X., Li M., Liu H., Cai L., Zhang B., Chen Y.,
RA   Zhou J., Hu S., Xiang H.;
RT   "Complete genome sequence of the metabolically versatile halophilic
RT   archaeon Haloferax mediterranei, a poly(3-hydroxybutyrate-co-3-
RT   hydroxyvalerate) producer.";
RL   J. Bacteriol. 194:4463-4464(2012).
RN   [3] {ECO:0000313|Proteomes:UP000011603}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 /
RC   R-4 {ECO:0000313|Proteomes:UP000011603};
RA   Becker E.A., Seitzer P., Tritt A., Larsen D., Yao A., Wu D., Darling A.,
RA   Eisen J.A., Facciotti M.T.;
RL   Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|EMBL:ELZ97572.1, ECO:0000313|Proteomes:UP000011603}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 33500 {ECO:0000313|EMBL:ELZ97572.1}, and ATCC 33500 / DSM
RC   1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4
RC   {ECO:0000313|Proteomes:UP000011603};
RX   PubMed=25393412; DOI=10.1371/journal.pgen.1004784;
RA   Becker E.A., Seitzer P.M., Tritt A., Larsen D., Krusor M., Yao A.I., Wu D.,
RA   Madern D., Eisen J.A., Darling A.E., Facciotti M.T.;
RT   "Phylogenetically driven sequencing of extremely halophilic archaea reveals
RT   strategies for static and dynamic osmo-response.";
RL   PLoS Genet. 10:E1004784-E1004784(2014).
RN   [5] {ECO:0000313|EMBL:AHZ23991.1, ECO:0000313|Proteomes:UP000027075}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 33500 {ECO:0000313|EMBL:AHZ23991.1}, and ATCC 33500 / DSM
RC   1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4
RC   {ECO:0000313|Proteomes:UP000027075};
RC   PLASMID=HMPLAS3 {ECO:0000313|EMBL:AHZ23991.1}, and Plasmid HMPLAS3
RC   {ECO:0000313|Proteomes:UP000027075};
RA   Bautista V.;
RT   "Transcriptional profiles of Haloferax mediterranei on the basis of
RT   nitrogen availability.";
RL   Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases.
RN   [6] {ECO:0000313|EMBL:AFK20757.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=CGMCC 1.2087 {ECO:0000313|EMBL:AFK20757.1};
RC   PLASMID=pHM100 {ECO:0000313|EMBL:AFK20757.1};
RA   Wang L., Yang H., Xiang H.;
RL   Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases.
RN   [7] {ECO:0000313|EMBL:QCQ77434.1, ECO:0000313|Proteomes:UP000299011}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 33500 {ECO:0000313|EMBL:QCQ77434.1}, and ATCC 33500 / DSM
RC   1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4
RC   {ECO:0000313|Proteomes:UP000299011};
RC   PLASMID=pHME132 {ECO:0000313|EMBL:QCQ77434.1,
RC   ECO:0000313|Proteomes:UP000299011};
RA   DasSarma S., DasSarma P., DasSarma S., Fomenkov A., Vincze T., Anton B.P.,
RA   Roberts R.J.;
RT   "Methylomes of two halophilic Archaea, Haloarcula marismortui and Haloferax
RT   mediterranei.";
RL   Submitted (APR-2019) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CP001869; AFK20757.1; -; Genomic_DNA.
DR   EMBL; CP007552; AHZ23991.1; -; Genomic_DNA.
DR   EMBL; AOLO01000014; ELZ97572.1; -; Genomic_DNA.
DR   EMBL; CP039142; QCQ77434.1; -; Genomic_DNA.
DR   RefSeq; WP_004060499.1; NZ_CP039142.1.
DR   AlphaFoldDB; I3R947; -.
DR   GeneID; 40158585; -.
DR   KEGG; hme:HFX_4063; -.
DR   PATRIC; fig|523841.21.peg.3361; -.
DR   HOGENOM; CLU_092678_0_0_2; -.
DR   OrthoDB; 27447at2157; -.
DR   Proteomes; UP000006469; Plasmid pHM100.
DR   Proteomes; UP000011603; Unassembled WGS sequence.
DR   Proteomes; UP000027075; Plasmid HMPLAS3.
DR   Proteomes; UP000299011; Plasmid pHME132.
DR   InterPro; IPR007050; HTH_bacterioopsin.
DR   PANTHER; PTHR34236; DIMETHYL SULFOXIDE REDUCTASE TRANSCRIPTIONAL ACTIVATOR; 1.
DR   PANTHER; PTHR34236:SF1; DIMETHYL SULFOXIDE REDUCTASE TRANSCRIPTIONAL ACTIVATOR; 1.
DR   Pfam; PF04967; HTH_10; 1.
PE   4: Predicted;
KW   Plasmid {ECO:0000313|EMBL:AFK20757.1};
KW   Transcription {ECO:0000256|ARBA:ARBA00023015};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          162..213
FT                   /note="HTH bat-type"
FT                   /evidence="ECO:0000259|Pfam:PF04967"
SQ   SEQUENCE   218 AA;  24577 MW;  4772364DC5AC5D5C CRC64;
     MRSVRLVLTW GDVQLHPLEA VFATEPDVDI EKIYYVNPVG ENEYAELGLI GGDLNRAEEL
     LEASQVVKEF EVSDSKDGIV YLHYAGSEYM DALLAVLFNH AIVLRWPVEF TRVNGQNGIR
     LTFIGSSRSI QEAIEDVPSG IDLHLEQSTQ FRGDPHSDTS LLTPQQWHIL STAIGMGYYE
     TPRETTQKDI ATRLDKSEGT IAERLQRIEA RILKSINF
//

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