ID   I3YR23_ALIFI            Unreviewed;       599 AA.
AC   I3YR23;
DT   05-SEP-2012, integrated into UniProtKB/TrEMBL.
DT   05-SEP-2012, sequence version 1.
DT   27-MAR-2024, entry version 42.
DE   SubName: Full=Retron-type reverse transcriptase {ECO:0000313|EMBL:AFL79441.1};
GN   OrderedLocusNames=Alfi_3211 {ECO:0000313|EMBL:AFL79441.1};
OS   Alistipes finegoldii (strain DSM 17242 / JCM 16770 / CCUG 46020 / CIP
OS   107999 / KCTC 15236 / AHN 2437).
OC   Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae;
OC   Alistipes.
OX   NCBI_TaxID=679935 {ECO:0000313|EMBL:AFL79441.1, ECO:0000313|Proteomes:UP000006052};
RN   [1] {ECO:0000313|Proteomes:UP000006052}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 / CIP 107999
RC   {ECO:0000313|Proteomes:UP000006052};
RX   PubMed=23961309; DOI=10.4056/sigs.3527032;
RA   Mavromatis K., Stackebrandt E., Munk C., Lapidus A., Nolan M., Lucas S.,
RA   Hammon N., Deshpande S., Cheng J.F., Tapia R., Goodwin L.A., Pitluck S.,
RA   Liolios K., Pagani I., Ivanova N., Mikhailova N., Huntemann M., Pati A.,
RA   Chen A., Palaniappan K., Land M., Hauser L., Rohde M., Gronow S., Goker M.,
RA   Detter J.C., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P.,
RA   Kyrpides N.C., Klenk H.P., Woyke T.;
RT   "Complete genome sequence of the bile-resistant pigment-producing anaerobe
RT   Alistipes finegoldii type strain (AHN2437(T)).";
RL   Stand. Genomic Sci. 8:26-36(2013).
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DR   EMBL; CP003274; AFL79441.1; -; Genomic_DNA.
DR   RefSeq; WP_014776537.1; NC_018011.1.
DR   AlphaFoldDB; I3YR23; -.
DR   STRING; 679935.Alfi_3211; -.
DR   KEGG; afd:Alfi_3211; -.
DR   PATRIC; fig|679935.3.peg.3130; -.
DR   eggNOG; COG1403; Bacteria.
DR   eggNOG; COG3344; Bacteria.
DR   HOGENOM; CLU_013584_3_1_10; -.
DR   Proteomes; UP000006052; Chromosome.
DR   GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0006397; P:mRNA processing; IEA:InterPro.
DR   CDD; cd01651; RT_G2_intron; 1.
DR   InterPro; IPR049030; AI2M-like_HNH.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR024937; Domain_X.
DR   InterPro; IPR000477; RT_dom.
DR   PANTHER; PTHR34047:SF2; NUCLEAR INTRON MATURASE 1, MITOCHONDRIAL; 1.
DR   PANTHER; PTHR34047; NUCLEAR INTRON MATURASE 1, MITOCHONDRIAL-RELATED; 1.
DR   Pfam; PF21368; AI2M-like_HNH; 1.
DR   Pfam; PF01348; Intron_maturas2; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   PROSITE; PS50878; RT_POL; 1.
PE   4: Predicted;
KW   Nucleotidyltransferase {ECO:0000313|EMBL:AFL79441.1};
KW   RNA-directed DNA polymerase {ECO:0000313|EMBL:AFL79441.1};
KW   Transferase {ECO:0000313|EMBL:AFL79441.1}.
FT   DOMAIN          69..360
FT                   /note="Reverse transcriptase"
FT                   /evidence="ECO:0000259|PROSITE:PS50878"
SQ   SEQUENCE   599 AA;  70153 MW;  67D703B8A6323AD0 CRC64;
     MRSPARVLNS LTKHSQTTEY RFERLYRILF NEEMYYLAYQ RIYAKPGNMT QGADGETIDR
     MSLPRIEKLI LSLKDESYSP QPSRRVHIPK KNGKTRPLGV PSFDDKLVQE VVRMVLEAIY
     EGHFEDTSHG FRPHRSCHTA LNAVQKTFTG KKWFIEGDIK GFFDNVNHDI LIDILKERIS
     DERSIRLIRK FLRAGYLEQW RFHGTYSGMP QGGIISPVLA NIYLDKLDKY MKEYATGFDR
     GNRVRACREY EALTYQKRLV MRELKTATND VERKVLVKRL KEIDKTRSAM PCFDPMDGNF
     KRLKYVRYAD DFLIGIIVSK VKIKDDIKRF LADRLALELS DEKTLVTHTE KPAKFLGYEV
     TVRKSNLQKR NKRGSLSRVY GNKVRLKVTT EVIKKKLLEL GVLKFSYHNG HEQWIPKHRS
     ELINNDDLEI LDSYNAEIRG FYNYYSIANN ASELNTFHYI MQYSMYKTFA GKYRTTVRRI
     CRKYKRNGVF TVGYTVKNGK AKERRLYNEG FKRKRPSYDR SVDRCPNPMP GVSTTSLIDR
     LKAQKCELCG ATDNLVMHHV RKLGELKGKE NWEKLMIARR RKTMAVCGSC HQKIHHGTF
//