ID I7ZDT0_9GAMM Unreviewed; 540 AA.
AC I7ZDT0;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 50.
DE SubName: Full=Putative sigma 54 binding transcriptional regulator {ECO:0000313|EMBL:EIT69867.1};
GN ORFNames=WQQ_00040 {ECO:0000313|EMBL:EIT69867.1}, WQQ_01910
GN {ECO:0000313|EMBL:EIT70054.1};
OS Hydrocarboniphaga effusa AP103.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Nevskiales; Nevskiaceae;
OC Hydrocarboniphaga.
OX NCBI_TaxID=1172194 {ECO:0000313|EMBL:EIT69867.1, ECO:0000313|Proteomes:UP000003704};
RN [1] {ECO:0000313|EMBL:EIT69867.1, ECO:0000313|Proteomes:UP000003704}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AP103 {ECO:0000313|EMBL:EIT69867.1,
RC ECO:0000313|Proteomes:UP000003704};
RX PubMed=22933753; DOI=10.1128/JB.01017-12;
RA Chang H.K., Zylstra G.J., Chae J.C.;
RT "Genome Sequence of n-Alkane-Degrading Hydrocarboniphaga effusa Strain
RT AP103T (ATCC BAA-332T).";
RL J. Bacteriol. 194:5120-5120(2012).
RN [2] {ECO:0000313|EMBL:EIT69867.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=AP103 {ECO:0000313|EMBL:EIT69867.1};
RA Park J.-H., Zylstra G.J., Chae J.-C.;
RL Submitted (MAY-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EIT69867.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AKGD01000001; EIT69867.1; -; Genomic_DNA.
DR EMBL; AKGD01000001; EIT70054.1; -; Genomic_DNA.
DR RefSeq; WP_007183150.1; NZ_AKGD01000001.1.
DR AlphaFoldDB; I7ZDT0; -.
DR STRING; 1172194.WQQ_00040; -.
DR PATRIC; fig|1172194.4.peg.181; -.
DR OrthoDB; 9804019at2; -.
DR Proteomes; UP000003704; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0000156; F:phosphorelay response regulator activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0019629; P:propionate catabolic process, 2-methylcitrate cycle; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.40.50.2300; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR012704; Sig_transdc_resp-reg_PrpR.
DR InterPro; IPR010524; Sig_transdc_resp-reg_PrpR_N.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR NCBIfam; TIGR02329; propionate_PrpR; 1.
DR PANTHER; PTHR32071:SF21; PROPIONATE CATABOLISM OPERON REGULATORY PROTEIN; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF06506; PrpR_N; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF159800; PrpR receptor domain-like; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000003704};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 218..444
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 540 AA; 58817 MW; F5C6BA8ED7BABF4A CRC64;
MQTQDSSLPI IWTVSVTRLS SLLRDVTPEF DGRAQIDTIN LGFEEAVTLI RERLRTEDCD
VLLSAGANGE YLRNRIDKPL VLIQPDGFDL MQALARARRH SNRIGVVVYG TDLPAFTAFK
QQFGLQIELR SYTNTEEARD LVAELIALGC GAIVGTGFIS ELAERLGVVG ILMYSADSIR
KSFQQAIDLA RMLSAARSGP RRALAAKPAD SKFSLRRLIG NSESTTVLRD QIRLYGASDR
TVLVTGETGT GKELVAQALH GASARRSSPF VAVNCGAIAE SLLESELFGY EEGAFTGSRR
GGRVGLIEAA NGGTLFLDEI GEMPLALQTR LLRVLEEREV LRVGSVRPTP VDVRVIAATH
VELDARVADG RFRRDLYYRL NVLRIALAPL RERVDDIPLL LMNFLRAAGA GAMVLDGPAH
ALLQRHGWPG NLRELRNLAE RLAVLAHAES PLSAITRPLL LRCAPELFGG AQTIAEPAGS
LSNDTARLQA HALSSRVVRP DAASLQRALA AVGGSREKLA DQLGVSRTTL WRWLRERSLG
//
