ID J0KSD1_9BURK Unreviewed; 1030 AA.
AC J0KSD1;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 51.
DE SubName: Full=Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJE54038.1};
GN ORFNames=PMI14_01071 {ECO:0000313|EMBL:EJE54038.1};
OS Acidovorax sp. CF316.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Acidovorax.
OX NCBI_TaxID=1144317 {ECO:0000313|EMBL:EJE54038.1, ECO:0000313|Proteomes:UP000004811};
RN [1] {ECO:0000313|EMBL:EJE54038.1, ECO:0000313|Proteomes:UP000004811}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CF316 {ECO:0000313|EMBL:EJE54038.1,
RC ECO:0000313|Proteomes:UP000004811};
RX PubMed=23045501; DOI=10.1128/JB.01243-12;
RA Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT sequences from diverse bacteria isolated from the rhizosphere and
RT endosphere of Populus deltoides.";
RL J. Bacteriol. 194:5991-5993(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJE54038.1}.
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DR EMBL; AKJX01000040; EJE54038.1; -; Genomic_DNA.
DR AlphaFoldDB; J0KSD1; -.
DR PATRIC; fig|1144317.3.peg.1012; -.
DR Proteomes; UP000004811; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR CDD; cd01948; EAL; 1.
DR CDD; cd01949; GGDEF; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.20.20.450; EAL domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR Gene3D; 3.40.190.10; Periplasmic binding protein-like II; 2.
DR InterPro; IPR001633; EAL_dom.
DR InterPro; IPR035919; EAL_sf.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR001610; PAC.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013656; PAS_4.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR001638; Solute-binding_3/MltF_N.
DR NCBIfam; TIGR00254; GGDEF; 1.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR44757:SF2; BIOFILM ARCHITECTURE MAINTENANCE PROTEIN MBAA; 1.
DR PANTHER; PTHR44757; DIGUANYLATE CYCLASE DGCP; 1.
DR Pfam; PF00563; EAL; 1.
DR Pfam; PF00990; GGDEF; 1.
DR Pfam; PF08448; PAS_4; 1.
DR Pfam; PF13426; PAS_9; 1.
DR Pfam; PF00497; SBP_bac_3; 1.
DR SMART; SM00052; EAL; 1.
DR SMART; SM00267; GGDEF; 1.
DR SMART; SM00086; PAC; 2.
DR SMART; SM00091; PAS; 2.
DR SMART; SM00062; PBPb; 1.
DR SUPFAM; SSF141868; EAL domain-like; 1.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR SUPFAM; SSF53850; Periplasmic binding protein-like II; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR PROSITE; PS50883; EAL; 1.
DR PROSITE; PS50887; GGDEF; 1.
DR PROSITE; PS50113; PAC; 2.
DR PROSITE; PS50112; PAS; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000004811};
KW Signal {ECO:0000256|ARBA:ARBA00022729};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 20..39
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 59..79
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 315..336
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 421..475
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 495..517
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 544..596
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 628..766
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
FT DOMAIN 775..1029
FT /note="EAL"
FT /evidence="ECO:0000259|PROSITE:PS50883"
SQ SEQUENCE 1030 AA; 113078 MW; 7A17584D234A997D CRC64;
MLPQGLESRA KRSVPGSRRH AQVLVTFGCF SNLWLTYCFQ PLWGFPIVSS RTLRWQGRLA
GWLVGALWAL LPVCASTAAP VREVRVGVYA NEPTVFMNQH GRPAGIFVDL LNLVAERERW
TLRYVPCELR ACLDDLQNGR LDLVPDAPRA QARVAQFDFT ALPLVDTWSA VYRLPSLPIR
SVVDLDGKRV AVQRGTLQRD HFLAMTRRYG LQVMVVEVDS PEQAFSAVGG NNAEAAISNH
LFGQAHAPGQ GLVDAGIVLQ PGGLYVAAGK DRNPELLAAI DKRSAQWRDG SDASYAQVMR
RWVGAPPASA IGRPALWALA ALLLAGALAV LAVFVWRRRV RGQSRRWPAS EHKFGTILDS
VEAFIYIKDM QHRYLYANQH MLALRPDAAD GLIGGDDSAI FDAATVHQLI ANDRLVLERG
ERIEVEETNT FHDGSVRTYL SVKIPLRHTD GSIHALCGIS TDITDHQGVA ESLQIAAIVF
ESFEGMVVTG PDQCILQANT SYARLSGYTV EELVGKTPAL LQSGRHDQTF YRTMHETLQS
VGSWQGEVWN RRKDGEVYPA WITITAVRSA QGAITHYVGT QTDISSRKAA EEEIRLLAFY
DPLTGLPNRR LMADRLQHSL AASARTGTGG ALLFVDMDNF KDLNDTQGHE IGDELLRQVA
ARLGGCVRNG DTVARLGGDE FVLLLEGLSA LPHEAASQAE IVGRKVLQAL GQSYQLGGHA
HHSSCSIGVT LYADPHTTVD ELLKRGDMAM YQAKGAGRNT LRFFDPRTQA AVTARTALEA
GLREALREGQ FLLHYQPQIS RDHGMVGAEA LLRWEHPERG LVSPAEFVPV AEACGLIVPL
GAWILRAACL QLVEWGHDAA TAHWTVAVNV SALQFRHPHF VEEVVEVLKS TGANPLRLKL
ELTESLLLDD VEDIIRRMTT LRALGVRFSL DDFGTGYSSL SYLKRLPLDQ LKIDQSFVRD
LLTDPNDAAI ARTIVNLAHS LDLGVIAEGV ETLEQRDMLA SVGCLHYQGY LFGRPAPASA
LPRIAAQVVV
//
