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Database: UniProt
Entry: J2VBZ5_9PSED
LinkDB: J2VBZ5_9PSED
Original site: J2VBZ5_9PSED 
ID   J2VBZ5_9PSED            Unreviewed;       226 AA.
AC   J2VBZ5;
DT   03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT   03-OCT-2012, sequence version 1.
DT   24-JAN-2024, entry version 35.
DE   SubName: Full=Alkylated DNA repair protein {ECO:0000313|EMBL:EJM01003.1};
GN   ORFNames=PMI18_02684 {ECO:0000313|EMBL:EJM01003.1};
OS   Pseudomonas sp. GM102.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC   Pseudomonadaceae; Pseudomonas.
OX   NCBI_TaxID=1144321 {ECO:0000313|EMBL:EJM01003.1, ECO:0000313|Proteomes:UP000007514};
RN   [1] {ECO:0000313|EMBL:EJM01003.1, ECO:0000313|Proteomes:UP000007514}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=GM102 {ECO:0000313|EMBL:EJM01003.1,
RC   ECO:0000313|Proteomes:UP000007514};
RX   PubMed=23045501; DOI=10.1128/JB.01243-12;
RA   Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA   Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT   "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT   sequences from diverse bacteria isolated from the rhizosphere and
RT   endosphere of Populus deltoides.";
RL   J. Bacteriol. 194:5991-5993(2012).
CC   -!- COFACTOR:
CC       Name=Fe(2+); Xref=ChEBI:CHEBI:29033;
CC         Evidence={ECO:0000256|PIRSR:PIRSR604574-2};
CC       Note=Binds 1 Fe(2+) ion per subunit. {ECO:0000256|PIRSR:PIRSR604574-2};
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EJM01003.1}.
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DR   EMBL; AKJB01000057; EJM01003.1; -; Genomic_DNA.
DR   RefSeq; WP_007900030.1; NZ_AKJB01000057.1.
DR   AlphaFoldDB; J2VBZ5; -.
DR   PATRIC; fig|1144321.3.peg.2612; -.
DR   Proteomes; UP000007514; Unassembled WGS sequence.
DR   GO; GO:0051213; F:dioxygenase activity; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR   Gene3D; 2.60.120.590; Alpha-ketoglutarate-dependent dioxygenase AlkB-like; 1.
DR   InterPro; IPR004574; Alkb.
DR   InterPro; IPR027450; AlkB-like.
DR   InterPro; IPR037151; AlkB-like_sf.
DR   InterPro; IPR005123; Oxoglu/Fe-dep_dioxygenase.
DR   PANTHER; PTHR16557; ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED; 1.
DR   PANTHER; PTHR16557:SF2; NUCLEIC ACID DIOXYGENASE ALKBH1; 1.
DR   Pfam; PF13532; 2OG-FeII_Oxy_2; 1.
DR   SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR   PROSITE; PS51471; FE2OG_OXY; 1.
PE   4: Predicted;
KW   Dioxygenase {ECO:0000256|ARBA:ARBA00022964};
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   Iron {ECO:0000256|PIRSR:PIRSR604574-2};
KW   Metal-binding {ECO:0000256|PIRSR:PIRSR604574-2};
KW   Oxidoreductase {ECO:0000256|ARBA:ARBA00023002}.
FT   DOMAIN          126..226
FT                   /note="Fe2OG dioxygenase"
FT                   /evidence="ECO:0000259|PROSITE:PS51471"
FT   BINDING         144
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_note="catalytic"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR604574-2"
FT   BINDING         146
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_note="catalytic"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR604574-2"
FT   BINDING         200
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /ligand_note="catalytic"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR604574-2"
SQ   SEQUENCE   226 AA;  25377 MW;  44E917E07516EC0F CRC64;
     MRYDPMSPIN FDLFANTEPE QQPRREQIGE QSYVLRAFAL PWLDRLLPAL ESVLAAAPFR
     QMVTPGGFTM SVALSSCGTW GWTTDRSGYQ YTRNDPQTGN PWPEMPEVFF ELAQAAAREA
     GFMDFVPDSC LINRYIPGAR MSLHQDKNED SYAAPIVSVS LGLPATFLFG GFERSAKSQR
     VPLLHGDIVV WGGVDRLRYH GVLPIKEGYH PQLGEQRINF TFRTAG
//
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