ID J2WQ35_9SPHN Unreviewed; 570 AA.
AC J2WQ35;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 24-JAN-2024, entry version 41.
DE RecName: Full=30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111};
GN ORFNames=PMI04_01429 {ECO:0000313|EMBL:EJK84365.1};
OS Sphingobium sp. AP49.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Sphingobium.
OX NCBI_TaxID=1144307 {ECO:0000313|EMBL:EJK84365.1, ECO:0000313|Proteomes:UP000006480};
RN [1] {ECO:0000313|EMBL:EJK84365.1, ECO:0000313|Proteomes:UP000006480}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AP49 {ECO:0000313|EMBL:EJK84365.1,
RC ECO:0000313|Proteomes:UP000006480};
RX PubMed=23045501; DOI=10.1128/JB.01243-12;
RA Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT sequences from diverse bacteria isolated from the rhizosphere and
RT endosphere of Populus deltoides.";
RL J. Bacteriol. 194:5991-5993(2012).
CC -!- FUNCTION: Binds mRNA; thus facilitating recognition of the initiation
CC point. It is needed to translate mRNA with a short Shine-Dalgarno (SD)
CC purine-rich sequence. {ECO:0000256|ARBA:ARBA00025604,
CC ECO:0000256|PIRNR:PIRNR002111}.
CC -!- SIMILARITY: Belongs to the bacterial ribosomal protein bS1 family.
CC {ECO:0000256|ARBA:ARBA00006767, ECO:0000256|PIRNR:PIRNR002111}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJK84365.1}.
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DR EMBL; AJVL01000026; EJK84365.1; -; Genomic_DNA.
DR RefSeq; WP_007708266.1; NZ_CP124576.1.
DR AlphaFoldDB; J2WQ35; -.
DR STRING; 1144307.PMI04_01429; -.
DR PATRIC; fig|1144307.3.peg.1393; -.
DR eggNOG; COG0539; Bacteria.
DR OrthoDB; 9804077at2; -.
DR Proteomes; UP000006480; Unassembled WGS sequence.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd05687; S1_RPS1_repeat_ec1_hs1; 1.
DR CDD; cd04465; S1_RPS1_repeat_ec2_hs2; 1.
DR CDD; cd05688; S1_RPS1_repeat_ec3; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 5.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR000110; Ribosomal_bS1.
DR InterPro; IPR035104; Ribosomal_protein_S1-like.
DR InterPro; IPR003029; S1_domain.
DR NCBIfam; TIGR00717; rpsA; 1.
DR PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR PANTHER; PTHR10724:SF7; 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC; 1.
DR Pfam; PF00575; S1; 6.
DR PIRSF; PIRSF002111; RpsA; 1.
DR PRINTS; PR00681; RIBOSOMALS1.
DR SMART; SM00316; S1; 6.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 6.
DR PROSITE; PS50126; S1; 6.
PE 3: Inferred from homology;
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Ribonucleoprotein {ECO:0000256|PIRNR:PIRNR002111};
KW Ribosomal protein {ECO:0000256|PIRNR:PIRNR002111,
KW ECO:0000313|EMBL:EJK84365.1}; RNA-binding {ECO:0000256|PIRNR:PIRNR002111}.
FT DOMAIN 29..95
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 113..179
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 200..268
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 285..355
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 372..442
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 464..533
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
SQ SEQUENCE 570 AA; 61659 MW; ADC51D603A51516C CRC64;
MASTAFPSRD DFAALLNDSL GGEDGGFEGR VVKGTVTGIE NDMALIDVGL KSEGRVPLRE
FAAPGQKADL KVGDEVEVYV DRVENAHGEA MLSRDRARRE AAWDKLEAEF TESARVEGVI
FGRVKGGFTV DLDGAVAFLP GSQVDIRPVR DVTPLMDIPQ PFQILKMDRR RGNIVVSRRA
ILEETRAEQR SGLIQTLAEG QIIEGVVKNI TDYGAFVDLG GIDGLLHVTD LSYKRINHPN
EMINIGDTVR VQIIRINRET QRISLGMKQL ESDPWEGAAA KYPVGAKLSG RVTNITEYGA
FVELEPGIEG LVHVSEMSWT KKNVHPGKIV STSQEVEVIV LEVDPEKRRI SLGLKQAQSN
PWDSFAERHP IGSTVEGEVK NATEFGLFIG LDGDVDGMVH MSDIAWGISG EDALALHRKG
ETVSAVVLDI DVEKERISLG MKQLERGGPA AGGTSAAAAG LNKNAIVTVT VLEVRDGGLE
VQAGDDGATG FIKRSDLGRD RDEQRSERFQ IGQKFDAMVI GFDRAKKPTF SVKAMQIAEE
KQAVAQYGSS DSGASLGDIL GEALKAKNEG
//