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Database: UniProt
Entry: J2WQ35_9SPHN
LinkDB: J2WQ35_9SPHN
Original site: J2WQ35_9SPHN 
ID   J2WQ35_9SPHN            Unreviewed;       570 AA.
AC   J2WQ35;
DT   03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT   03-OCT-2012, sequence version 1.
DT   24-JAN-2024, entry version 41.
DE   RecName: Full=30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111};
GN   ORFNames=PMI04_01429 {ECO:0000313|EMBL:EJK84365.1};
OS   Sphingobium sp. AP49.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingobium.
OX   NCBI_TaxID=1144307 {ECO:0000313|EMBL:EJK84365.1, ECO:0000313|Proteomes:UP000006480};
RN   [1] {ECO:0000313|EMBL:EJK84365.1, ECO:0000313|Proteomes:UP000006480}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AP49 {ECO:0000313|EMBL:EJK84365.1,
RC   ECO:0000313|Proteomes:UP000006480};
RX   PubMed=23045501; DOI=10.1128/JB.01243-12;
RA   Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA   Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT   "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT   sequences from diverse bacteria isolated from the rhizosphere and
RT   endosphere of Populus deltoides.";
RL   J. Bacteriol. 194:5991-5993(2012).
CC   -!- FUNCTION: Binds mRNA; thus facilitating recognition of the initiation
CC       point. It is needed to translate mRNA with a short Shine-Dalgarno (SD)
CC       purine-rich sequence. {ECO:0000256|ARBA:ARBA00025604,
CC       ECO:0000256|PIRNR:PIRNR002111}.
CC   -!- SIMILARITY: Belongs to the bacterial ribosomal protein bS1 family.
CC       {ECO:0000256|ARBA:ARBA00006767, ECO:0000256|PIRNR:PIRNR002111}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EJK84365.1}.
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DR   EMBL; AJVL01000026; EJK84365.1; -; Genomic_DNA.
DR   RefSeq; WP_007708266.1; NZ_CP124576.1.
DR   AlphaFoldDB; J2WQ35; -.
DR   STRING; 1144307.PMI04_01429; -.
DR   PATRIC; fig|1144307.3.peg.1393; -.
DR   eggNOG; COG0539; Bacteria.
DR   OrthoDB; 9804077at2; -.
DR   Proteomes; UP000006480; Unassembled WGS sequence.
DR   GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:InterPro.
DR   CDD; cd05687; S1_RPS1_repeat_ec1_hs1; 1.
DR   CDD; cd04465; S1_RPS1_repeat_ec2_hs2; 1.
DR   CDD; cd05688; S1_RPS1_repeat_ec3; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 5.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR000110; Ribosomal_bS1.
DR   InterPro; IPR035104; Ribosomal_protein_S1-like.
DR   InterPro; IPR003029; S1_domain.
DR   NCBIfam; TIGR00717; rpsA; 1.
DR   PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR   PANTHER; PTHR10724:SF7; 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC; 1.
DR   Pfam; PF00575; S1; 6.
DR   PIRSF; PIRSF002111; RpsA; 1.
DR   PRINTS; PR00681; RIBOSOMALS1.
DR   SMART; SM00316; S1; 6.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 6.
DR   PROSITE; PS50126; S1; 6.
PE   3: Inferred from homology;
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Ribonucleoprotein {ECO:0000256|PIRNR:PIRNR002111};
KW   Ribosomal protein {ECO:0000256|PIRNR:PIRNR002111,
KW   ECO:0000313|EMBL:EJK84365.1}; RNA-binding {ECO:0000256|PIRNR:PIRNR002111}.
FT   DOMAIN          29..95
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   DOMAIN          113..179
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   DOMAIN          200..268
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   DOMAIN          285..355
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   DOMAIN          372..442
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   DOMAIN          464..533
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
SQ   SEQUENCE   570 AA;  61659 MW;  ADC51D603A51516C CRC64;
     MASTAFPSRD DFAALLNDSL GGEDGGFEGR VVKGTVTGIE NDMALIDVGL KSEGRVPLRE
     FAAPGQKADL KVGDEVEVYV DRVENAHGEA MLSRDRARRE AAWDKLEAEF TESARVEGVI
     FGRVKGGFTV DLDGAVAFLP GSQVDIRPVR DVTPLMDIPQ PFQILKMDRR RGNIVVSRRA
     ILEETRAEQR SGLIQTLAEG QIIEGVVKNI TDYGAFVDLG GIDGLLHVTD LSYKRINHPN
     EMINIGDTVR VQIIRINRET QRISLGMKQL ESDPWEGAAA KYPVGAKLSG RVTNITEYGA
     FVELEPGIEG LVHVSEMSWT KKNVHPGKIV STSQEVEVIV LEVDPEKRRI SLGLKQAQSN
     PWDSFAERHP IGSTVEGEVK NATEFGLFIG LDGDVDGMVH MSDIAWGISG EDALALHRKG
     ETVSAVVLDI DVEKERISLG MKQLERGGPA AGGTSAAAAG LNKNAIVTVT VLEVRDGGLE
     VQAGDDGATG FIKRSDLGRD RDEQRSERFQ IGQKFDAMVI GFDRAKKPTF SVKAMQIAEE
     KQAVAQYGSS DSGASLGDIL GEALKAKNEG
//
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