ID J2ZW81_9PSED Unreviewed; 516 AA.
AC J2ZW81;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 24-JAN-2024, entry version 51.
DE SubName: Full=Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains {ECO:0000313|EMBL:EJM57263.1};
GN ORFNames=PMI28_02795 {ECO:0000313|EMBL:EJM57263.1};
OS Pseudomonas sp. GM48.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=1144330 {ECO:0000313|EMBL:EJM57263.1, ECO:0000313|Proteomes:UP000007293};
RN [1] {ECO:0000313|EMBL:EJM57263.1, ECO:0000313|Proteomes:UP000007293}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=GM48 {ECO:0000313|EMBL:EJM57263.1,
RC ECO:0000313|Proteomes:UP000007293};
RX PubMed=23045501; DOI=10.1128/JB.01243-12;
RA Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT sequences from diverse bacteria isolated from the rhizosphere and
RT endosphere of Populus deltoides.";
RL J. Bacteriol. 194:5991-5993(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJM57263.1}.
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DR EMBL; AKJM01000075; EJM57263.1; -; Genomic_DNA.
DR RefSeq; WP_007986823.1; NZ_AKJM01000075.1.
DR AlphaFoldDB; J2ZW81; -.
DR PATRIC; fig|1144330.3.peg.2760; -.
DR OrthoDB; 9804019at2; -.
DR Proteomes; UP000007293; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071:SF35; ANAEROBIC NITRIC OXIDE REDUCTASE TRANSCRIPTION REGULATOR NORR; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00065; GAF; 1.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 194..423
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT COILED 156..186
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 516 AA; 56863 MW; 75F51FA5D33D68D7 CRC64;
MTAKPLLTAL LPLVADLSRE LPEGERYRRL LEAMRALLPC DAAALLRLDD EWLVPLAVDG
LSTDTLGRRF KVSEHPRFEA LLSSPGPTRF AADCNLPDPY DGLVDGLDDH LEVHDCMGCP
LFIDERPWGL LTLDALNPEQ FEPIELGALE AFASLAAATV NAAERIERLN NRVEDEHQRA
EVYRQASGQQ HREMIGQSKA HKRLMEEINL VGGSDLTVLI TGETGVGKEL VAQAIHAASP
RADKPIISLN CAALPDTLVE SELFGHVRGA FTGAMNDRRG KFELANGGTL FLDEVGELSL
TVQAKLLRVL QSGQLQRLGS DKEHQVDVRL IAATNRDLAE EVRSGRYRAD FYHRLSVYPL
LVPALRDRGR DVLLLSGYFL EQNRSRMGLN SLRLNSDAQA ALLAYDWPGN VRELEHLIGR
SALKALGNCK ERPKILSLSA ADLDLPNANV EAAAEQPAAL VTQAVTGDLR EATERYQRQL
IGACLERHNN NWASAARELG LDRANLGRMA KRLGMK
//
