ID J3L4N7_ORYBR Unreviewed; 1235 AA.
AC J3L4N7;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 54.
DE RecName: Full=Helicase-like transcription factor CHR28 {ECO:0008006|Google:ProtNLM};
GN Name=102709051 {ECO:0000313|EnsemblPlants:OB01G41930.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB01G41930.1};
RN [1] {ECO:0000313|EnsemblPlants:OB01G41930.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB01G41930.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB01G41930.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
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DR RefSeq; XP_015699033.1; XM_015843547.1.
DR AlphaFoldDB; J3L4N7; -.
DR STRING; 4533.J3L4N7; -.
DR EnsemblPlants; OB01G41930.1; OB01G41930.1; OB01G41930.
DR GeneID; 102709051; -.
DR Gramene; OB01G41930.1; OB01G41930.1; OB01G41930.
DR KEGG; obr:102709051; -.
DR eggNOG; KOG1001; Eukaryota.
DR HOGENOM; CLU_000315_2_3_1; -.
DR OMA; ICFRSES; -.
DR OrthoDB; 11932at2759; -.
DR Proteomes; UP000006038; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd18008; DEXDc_SHPRH-like; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 3.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR018957; Znf_C3HC4_RING-type.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR45626:SF16; SNF2 DOMAIN-CONTAINING PROTEIN _ HELICASE DOMAIN-CONTAINING PROTEIN _ ZINC FINGER PROTEIN-LIKE PROTEIN; 1.
DR PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF00097; zf-C3HC4; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 513..789
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 943..982
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 1069..1230
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 315..352
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 676..724
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 332..352
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 680..694
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1235 AA; 138192 MW; E08D52F25DE37C3A CRC64;
MPYMDFMAFL DDEDWKEQQH EVNQGCFEMP VGSTSSENAV QNNEEIFENK ENWSNYMHTD
PSHNQMDVMM KCNHGGESYD HSEETLSYRL PENDFSENSR DGNPENQHLP REALNHANTT
EEIVPLYEDC TNGYFGQHSM HFDHTQVRVE NNFEEMEPHT NTYSACDMFT EQSGLSEVKC
DTGAMLGNSE QEGNHFTSMP MFSLDHSAVI PDIPYTEVNI GDVPGSMQNG NSSCLTVQGE
CLQGEYGEYP QPGYGYFDVA DGGSLHDLPQ NNQSYEMEQL QQNICESSPM QAGSPDQYCD
DTSLSDCYMD DVSSIDSMSS EQNRSEEICF RSESSTDSSP VPSSRNSTTE DADKYFGTPQ
HLQNSIFVPV NTQNQHTFIN SSDSMPPTFH KKYDIPRNGS SSILGTTSRN CFSIDCSRDS
DLCIIEGSRN PATGHILPHQ GLQHNFQQSM CANPNLPRFG GMRYRPHEER MTLRLALQDI
SQPKSEANPP DGVLTVPLLR HQKIALAWMV QKERNGSSCS GGILADDQGL GKTVSTISLI
LTERSPAPCS AVKQEPCEAV TLDDDDDEED DSTEPHLKKP LLAHLADTCK PEVISTTVKS
ESPLGNIKVA RPAAGTLVVC PTSVLRQWAD ELRNKVTSKA NLTFLVYHGS NRTKDPNDLT
KYDVVLTTYS IVSMEVPKQS SPDSDDEEKG KPDRYGAPVG SSGSKKRKAS SKKNKSVSTP
ESKLPEKPLA KVSWFRVILD EAQSIKNYRT QVARACWGLR AKRRWCLSGT PIQNAIEDLY
SYFRFLRYDP YAEYKKFCFM IKTPISRNPV TGYKKLQVVL KTVMLRRTKA TMLDGKPIIS
LPPKTVSLKT VDFTCEERAF YNTLEAESRE QFKEYAAAGT VKQNYVNILL MLLRLRQACD
HPHLVRGHES TSSRMSSLEM AKKLPVERQE SLLICLQSCS ALCSLCTDAP EDAIVTICGH
VFCNQCILEH LTGDDSVCPV SNCRVRLNST SLFSRGTLEC AQSGSTCELL SNDSDVDVLQ
EKQPRFDSSY ASSKVRAALD ILLSLPQLDF THTSDDKSKI VHPDMINGNS SSEYIDTKTT
EKAIVFSQWT RMLDLLEVHL KSSNVTYRRL DGTMSVAARD RAVKDFNTNP EVSVMIMSLK
AASLGLNMVA ACHVLLLDLW WNPTTEDQAV DRAHRIGQTR PVTVSRLTIK DTVEDRILAL
QEKKREMVAS AFGEDKSGAH QTRLTVEDLN YLFMV
//
