ID J3LNQ4_ORYBR Unreviewed; 866 AA.
AC J3LNQ4;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 24-JAN-2024, entry version 53.
DE RecName: Full=MIF4G domain-containing protein {ECO:0000259|SMART:SM00543};
GN Name=102709543 {ECO:0000313|EnsemblPlants:OB03G26800.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G26800.1};
RN [1] {ECO:0000313|EnsemblPlants:OB03G26800.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G26800.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB03G26800.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the NCBP1 family.
CC {ECO:0000256|ARBA:ARBA00007413}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR RefSeq; XP_006650074.1; XM_006650011.2.
DR AlphaFoldDB; J3LNQ4; -.
DR STRING; 4533.J3LNQ4; -.
DR EnsemblPlants; OB03G26800.1; OB03G26800.1; OB03G26800.
DR GeneID; 102709543; -.
DR Gramene; OB03G26800.1; OB03G26800.1; OB03G26800.
DR KEGG; obr:102709543; -.
DR eggNOG; KOG1104; Eukaryota.
DR HOGENOM; CLU_013207_1_0_1; -.
DR OMA; CAAEGLM; -.
DR OrthoDB; 5477544at2759; -.
DR Proteomes; UP000006038; Chromosome 3.
DR GO; GO:0005845; C:mRNA cap binding complex; IEA:EnsemblPlants.
DR GO; GO:0005846; C:nuclear cap binding complex; IEA:EnsemblPlants.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000339; F:RNA cap binding; IEA:EnsemblPlants.
DR GO; GO:1901527; P:abscisic acid-activated signaling pathway involved in stomatal movement; IEA:EnsemblPlants.
DR GO; GO:0000380; P:alternative mRNA splicing, via spliceosome; IEA:EnsemblPlants.
DR GO; GO:0051607; P:defense response to virus; IEA:EnsemblPlants.
DR GO; GO:0048574; P:long-day photoperiodism, flowering; IEA:EnsemblPlants.
DR GO; GO:0006406; P:mRNA export from nucleus; IEA:InterPro.
DR GO; GO:0031053; P:primary miRNA processing; IEA:EnsemblPlants.
DR GO; GO:0000394; P:RNA splicing, via endonucleolytic cleavage and ligation; IEA:EnsemblPlants.
DR Gene3D; 1.25.40.180; -; 3.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR027159; CBP80.
DR InterPro; IPR015172; MIF4G-like_typ-1.
DR InterPro; IPR015174; MIF4G-like_typ-2.
DR InterPro; IPR003890; MIF4G-like_typ-3.
DR PANTHER; PTHR12412; CAP BINDING PROTEIN; 1.
DR PANTHER; PTHR12412:SF2; NUCLEAR CAP-BINDING PROTEIN SUBUNIT 1; 1.
DR Pfam; PF02854; MIF4G; 1.
DR Pfam; PF09088; MIF4G_like; 1.
DR Pfam; PF09090; MIF4G_like_2; 1.
DR SMART; SM00543; MIF4G; 1.
DR SUPFAM; SSF48371; ARM repeat; 3.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038}.
FT DOMAIN 10..228
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT COILED 643..714
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 866 AA; 99004 MW; CD7543C51880B946 CRC64;
MSAGWRTLLL RIGDRCPEYA GSADHKEHIE TCYGVLCREY EHSKDAIFEF FLQCADQLPH
KIPFFGVLIG LINLENEDFA KDIVNTTHAN LLDALHNENR DRIRILLRFL CGLMCSKVVL
PNSIIETFET LLSSAATILD EETGNPSWQP CADFYVYCIL ASLPWGGSEL FEQVPDEFER
VLVGIQSYIS IRRHFDDIAF SVFETDEGNS PNKKDFIEDL WERIQVLSRN GWKVKSVPKP
HLSFEAQLVA GVSHRFSPIS CPPPTISQSS SEIVKGQEKH EADLKYPQRL RRLHIFPTNK
AENMQPVDRF VVEECILDVL LFFNGCRKEC AFYLVSLPVP FRYEYLMAET IFSQLLLLPN
PPFRPIYYTL VIIDLCKALP GAFPSVVVGA VHALFERISN MDMECRTRLI LWFSHHLSNF
QFIWPWQEWA YVKDLPKWAP QRVFVQEVLE REIRLSYFDK IKQSIEDAAE LEELLPPKAG
PNFRYHSDEG KESTDGHRLS KELVGMVRGK KTVRDIILWV EEQIIPANGA KFALDVVSQT
LLDIGSKSFT HLITVLERYN QIISKLCPNE EMQLLLMDEV SAYWKNSTQM IAITIDRMMV
YRLISNLAIV KWVFSPANVD QFHVSDRPWE ILRNAVSKTY NRIYDLRKEI QTLRKGLQAA
KEASEKANRE LEEAKSIIEI VDGQPVPVEK PGRLKRLQTR ADTMKEEEVT TEESLEAKDA
LLVRGLEESK ELLRLLFKSF VDVLTERLPP ISADGEVPNL RAGDPNVNSA ASAPEATMDI
DNENGADNDS QLNGQNTKVG HNVGELEQWC LCTLGYLKSF SRQYATEIWS HMSMLDQEVF
VGDIHPLIRK AAFSGLCRPT SEGSHL
//
