ID J3M1E7_ORYBR Unreviewed; 839 AA.
AC J3M1E7;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 46.
DE RecName: Full=SWIM-type domain-containing protein {ECO:0000259|PROSITE:PS50966};
GN Name=102715578 {ECO:0000313|EnsemblPlants:OB04G32220.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB04G32220.1};
RN [1] {ECO:0000313|EnsemblPlants:OB04G32220.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB04G32220.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB04G32220.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the FHY3/FAR1 family.
CC {ECO:0000256|ARBA:ARBA00005889}.
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DR RefSeq; XP_015692331.1; XM_015836845.1.
DR AlphaFoldDB; J3M1E7; -.
DR STRING; 4533.J3M1E7; -.
DR EnsemblPlants; OB04G32220.1; OB04G32220.1; OB04G32220.
DR GeneID; 102715578; -.
DR Gramene; OB04G32220.1; OB04G32220.1; OB04G32220.
DR KEGG; obr:102715578; -.
DR eggNOG; ENOG502QSMI; Eukaryota.
DR HOGENOM; CLU_008459_2_1_1; -.
DR OMA; YFCDVIC; -.
DR OrthoDB; 534090at2759; -.
DR Proteomes; UP000006038; Chromosome 4.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR InterPro; IPR004330; FAR1_DNA_bnd_dom.
DR InterPro; IPR031052; FHY3/FAR1.
DR InterPro; IPR018289; MULE_transposase_dom.
DR InterPro; IPR001289; NFYA.
DR InterPro; IPR006564; Znf_PMZ.
DR InterPro; IPR007527; Znf_SWIM.
DR PANTHER; PTHR31669:SF248; PROTEIN FAR1-RELATED SEQUENCE; 1.
DR PANTHER; PTHR31669; PROTEIN FAR1-RELATED SEQUENCE 10-RELATED; 1.
DR Pfam; PF03101; FAR1; 1.
DR Pfam; PF10551; MULE; 1.
DR Pfam; PF04434; SWIM; 1.
DR SMART; SM00575; ZnF_PMZ; 1.
DR PROSITE; PS51152; NFYA_HAP2_2; 1.
DR PROSITE; PS50966; ZF_SWIM; 1.
PE 3: Inferred from homology;
KW Activator {ECO:0000256|ARBA:ARBA00023159};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00325};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00325}.
FT DOMAIN 530..577
FT /note="SWIM-type"
FT /evidence="ECO:0000259|PROSITE:PS50966"
FT REGION 1..61
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 687..756
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..18
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 43..57
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 693..730
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 739..756
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 839 AA; 96149 MW; D611C7533AE683B9 CRC64;
MQKRSGRQGV QRATSKVPSR QALAERRQRG SRGQFLSKEG AQSADKIEQK AEEEPEVPPE
VVANAGGVPI VGMVFENEEK AYEYYASYAG NVGFSVRKGL WDKTVKNVAR SRVFVCSREG
FRSNNEAKRP RPETRTGCPA RIAIKLVSNG KYRVSEFVED HNHQLSAPFD IEMLNSQKVF
SKIQPGNRNA SNIPPGCKNY IRTKSTAHIN PEDLGALMDY CRRMKSENPS FYYAIQVDEN
DKATNVFWAD ARSIVDYHYF CDVICFDTTY KVNDCRKHLA LFLGMNHHRQ MVIFGSAFLY
DETVESFKWL FETFKSAMCG KQPKTILTDR SAALKEALSL TWPGTVHRSC LWQIYQNAAK
SLKHVFNTFE GFALDFRHCI FDIKDDQEFD EAWNVIVEKY NLKEEEWLNK LYEDRENWAL
PYNRQIFLGD IKSMLQAETC CVRLREYLDC EKHIYLFLKL FESSTEKRRQ EEIQADYQAS
QGALRVSVPL LWQGANLYTP IIFELFRKEY ELCMDCMAYN CGEFGSLSEY MITVKNKTKD
QLVRFDSSDG TVACTCKKFE NAGILCCHIL KVYELRNVKE IAPQYFLKRW RKDAKLGTAD
GINGFNFDND TKSSVPERYA AVCRLFYKIA AKAAENVDTF ALMANQSDQL FEEVERILQS
TMASKSSVGP SIKDQLTRMV QSDYLLNNSN EAEKSTGKKK NEVYRHKNAL GTNKRQKTRK
DTRHPDGATT GPRDGELNMT PENAQSESRN SPNQFLPDQL MQGHYILGHS FENLHNNLNQ
FGQASSVPTL QQQAFPVNNQ LAQGYPSDMH GLQFVGTNPQ MEHENTDQTQ SSIPVWDFL
//
