ID J3M6V4_ORYBR Unreviewed; 642 AA.
AC J3M6V4;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 51.
DE RecName: Full=Glycosyl hydrolase family 13 catalytic domain-containing protein {ECO:0000259|SMART:SM00642};
GN Name=102706106 {ECO:0000313|EnsemblPlants:OB05G23280.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB05G23280.1};
RN [1] {ECO:0000313|EnsemblPlants:OB05G23280.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB05G23280.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB05G23280.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000256|ARBA:ARBA00004229}.
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DR RefSeq; XP_006655289.2; XM_006655226.2.
DR AlphaFoldDB; J3M6V4; -.
DR STRING; 4533.J3M6V4; -.
DR EnsemblPlants; OB05G23280.1; OB05G23280.1; OB05G23280.
DR GeneID; 102706106; -.
DR Gramene; OB05G23280.1; OB05G23280.1; OB05G23280.
DR KEGG; obr:102706106; -.
DR eggNOG; KOG0470; Eukaryota.
DR HOGENOM; CLU_011725_2_0_1; -.
DR OMA; WHVSLAS; -.
DR OrthoDB; 610at2759; -.
DR Proteomes; UP000006038; Chromosome 5.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0043033; C:isoamylase complex; IEA:EnsemblPlants.
DR GO; GO:0019156; F:isoamylase activity; IEA:EnsemblPlants.
DR GO; GO:0010021; P:amylopectin biosynthetic process; IEA:EnsemblPlants.
DR GO; GO:0019252; P:starch biosynthetic process; IEA:InterPro.
DR GO; GO:0005983; P:starch catabolic process; IEA:EnsemblPlants.
DR CDD; cd11346; AmyAc_plant_IsoA; 1.
DR CDD; cd02856; E_set_GDE_Isoamylase_N; 1.
DR Gene3D; 3.20.20.80; Glycosidases; 1.
DR Gene3D; 2.60.40.1180; Golgi alpha-mannosidase II; 1.
DR Gene3D; 2.60.40.10; Immunoglobulins; 1.
DR InterPro; IPR044096; AmyAc_plant_ISA2.
DR InterPro; IPR044505; GlgX_Isoamylase_N_E_set.
DR InterPro; IPR006047; Glyco_hydro_13_cat_dom.
DR InterPro; IPR004193; Glyco_hydro_13_N.
DR InterPro; IPR013780; Glyco_hydro_b.
DR InterPro; IPR017853; Glycoside_hydrolase_SF.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR014756; Ig_E-set.
DR InterPro; IPR048650; ISOA1-3-like_C.
DR PANTHER; PTHR43002; GLYCOGEN DEBRANCHING ENZYME; 1.
DR PANTHER; PTHR43002:SF6; ISOAMYLASE 2, CHLOROPLASTIC; 1.
DR Pfam; PF00128; Alpha-amylase; 1.
DR Pfam; PF02922; CBM_48; 1.
DR Pfam; PF21156; ISOA1-3_C; 1.
DR SMART; SM00642; Aamy; 1.
DR SUPFAM; SSF51445; (Trans)glycosidases; 1.
DR SUPFAM; SSF81296; E set domains; 1.
DR SUPFAM; SSF51011; Glycosyl hydrolase domain; 1.
PE 4: Predicted;
KW Chloroplast {ECO:0000256|ARBA:ARBA00022528};
KW Plastid {ECO:0000256|ARBA:ARBA00022640};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT DOMAIN 133..514
FT /note="Glycosyl hydrolase family 13 catalytic"
FT /evidence="ECO:0000259|SMART:SM00642"
SQ SEQUENCE 642 AA; 70984 MW; BD917CFFE31673DA CRC64;
MSISGDGAVN FAVYSKNANA VSLYLYASGG GGEPALEIDL DPYVHRTGSV WHVSLASVEG
YASYAFCCGG IRRPLLDPYA KVIGDFVAGN SVYDEGVTAP SMRCFASLAS VPSYNWGRAR
HPRLPLEKLV VYRANVALFT KDKSSGLPDD AAGTFSGFCA KIEHFRSLGV NAILLEPVFP
FHQVKGPYFP YHFFSPMNLY SSEGSSVSAI NSMKDIVKAM HKNGIEVLLE VVFTHTAEGE
SECQTISMRG IDNPSYYIAN GMAGCKASVL NCNQPVTQRL ILDSLRHWVL DFHVDGFCFI
NAPFLLRDPG GEYLSRPPLL EAIAFDPVLS DTKIIADPWS PLDISNVQFL FPHWKRWAEM
NTRFSIDVRK FLKREALISD LATRLCGSGD LFSTRGPAFS FNYVSRNSGL SLVDLVSFSN
DDLASESSWN CGEEGPSENN VVLQTRLRQI RNFLFILFVS LGVPVLNMGD ECGHSAAGSV
SYKDRGPLNW RGMMTTFVKE ITGFISFLTA LRSRRGDIFQ RREFLKLENI HWYGSDLSEP
GWDDPTSNFL CMHINAEVDE MAADSVRGDL YICFNANEES MSATLPALAE GSIWLRLVDT
SLAFPGFFAT ECNPKVQQML GLSSYHVEGH TCVLFESKRA LA
//
