ID J3MD03_ORYBR Unreviewed; 4599 AA.
AC J3MD03;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 55.
DE RecName: Full=Chromatin structure-remodeling complex protein SYD {ECO:0008006|Google:ProtNLM};
GN Name=102710988 {ECO:0000313|EnsemblPlants:OB06G18970.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB06G18970.1};
RN [1] {ECO:0000313|EnsemblPlants:OB06G18970.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB06G18970.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB06G18970.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
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DR RefSeq; XP_006655974.1; XM_006655911.2.
DR STRING; 4533.J3MD03; -.
DR EnsemblPlants; OB06G18970.1; OB06G18970.1; OB06G18970.
DR GeneID; 102710988; -.
DR Gramene; OB06G18970.1; OB06G18970.1; OB06G18970.
DR eggNOG; KOG0386; Eukaryota.
DR eggNOG; KOG1181; Eukaryota.
DR HOGENOM; CLU_000112_0_0_1; -.
DR OMA; RCWPSAY; -.
DR OrthoDB; 1221768at2759; -.
DR Proteomes; UP000006038; Chromosome 6.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0042393; F:histone binding; IEA:InterPro.
DR CDD; cd17996; DEXHc_SMARCA2_SMARCA4; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR014012; HSA_dom.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR029295; SnAC.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR PANTHER; PTHR10799:SF973; ATP-DEPENDENT HELICASE BRM; 1.
DR PANTHER; PTHR10799; SNF2/RAD54 HELICASE FAMILY; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF14619; SnAC; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM01314; SnAC; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51204; HSA; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038}.
FT DOMAIN 832..904
FT /note="HSA"
FT /evidence="ECO:0000259|PROSITE:PS51204"
FT DOMAIN 1012..1179
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 1323..1469
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 81..262
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 489..546
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 658..687
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 701..721
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1652..1721
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1796..1835
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1979..2025
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2185..2210
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2588..2612
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2706..2776
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2888..2914
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 3231..3317
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 3584..3621
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 3639..3664
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 3713..3740
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 3759..3782
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 3859..3906
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 3922..3943
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 4137..4195
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 4217..4314
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 4367..4599
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 105..131
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 149..182
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 183..222
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 237..262
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 497..542
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 669..684
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1694..1721
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1998..2025
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2597..2612
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2709..2732
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2733..2747
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2895..2914
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 3231..3256
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 3257..3289
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 3606..3620
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 3865..3906
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 3927..3943
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4163..4190
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4250..4292
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4428..4509
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4510..4528
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4529..4543
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4551..4565
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4573..4587
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 4599 AA; 494624 MW; D106CA8BEE06CE52 CRC64;
MASSQQVELE AAKLLQKLIQ ESKDEPAKLA TKLYVICQHM KLSGKEQSLP YQVISRAMET
VVSQHGIDMD ALRSSRIPLA GGPQAGESSG AMPKDKEIIG SQPPMVGTDA SQSSAHTGLW
NFPSGSADMT RHGASISGRV PTGPNRSDVA GTDIHQGSMS QKSVRSSGME SPASLQIEDT
RSMNSHDSLK SDEKTSKKSS SKRKRVDPKA SGDLHSEENS KSDAMSTGHN IRKGKQPGKA
VTQSQPSRTV EHDQSHTLQV GNAQVPPLPS GATFFRAHQE GPSASSGRTI DKNKPSSPFT
MAQISNFAEG LSSGNIPAEL QKSMLGGANL LSASFGWNQN AQGSVMKNSQ GSVPNLIRPG
VNVEGKVNVG SQGTFNPMSA SQMDFPTVPP YISSSFGGGS SNTGSELNSS KVGAQMGIMH
GNPMQERHGI VRAPQRAASS QMSQTSPGVP FKEQQLKQLR AQCLVFLAFR NNLQPRKVHL
EIALGVAPPA EGGNAVQRGS ESRTTDGSGK ENGNSQENPA TFGRQSDISR LQSTSTGSAA
DVDSASKDPE IVKKKIKIAE HEKSLEAENI QLVQGTDSEM HSQETISPMP SGQPQYFQGD
TRKNTPDIYK ADAEHLNRNL GWGGGQGSSP LGGNRHPSME TGLLAKGEVS KESFASLRPH
HMPTDGSHHN LSGKDQTPET AGNEFENGSH MGEMIFERSA DEGDEGLSEQ DDLPSSPPKY
TMTDKWIVDH QKRRYEENKR KALDLQKAHR RISASYEKLK ENVSSSEDLS AKTKSVIELK
KLQLLQLQRR VRSEFLLDFF KPNTADLDRI KSVKKHRHGR RVKQLEKIEQ KMKEERQKRI
RERQKEFFAD IEAHRERLED SFKAKRERLK GFNRYVKEFH KRKERIHREK LDRIQREKIN
LLKNNDVEGY LRMVQDAKSD RVKQLLRETE KYLQKLGAKL QGAKSMDGRV LYSDSTANDI
EDESYQPQHY LESNEKYYQL AHSVKEVVND QPTYLQGGKL REYQMNGLRW LVSLYNNNLN
GILADEMGLG KTVQVISLLC YLMETKNDRG PFLVVVPSSV LPGWESELNF WAPSINKIAY
AGPPEERRKL FKEMIVHQKF NVLLTTYEYL MNKHDRPKLS KIQWHYIIID EGHRIKNASC
KLNADLKHYR SSHRLLLTGT PLQNNLEELW ALLNFLLPNI FNSSEDFSQW FNKPFESNGD
SSTEEALLSE EENLLIINRL HQVLRPFVLR RLKHKVENEL PEKIERLVRC WPSAYQKLLI
KRVEENLGGI GAVKVRSVHN TVMELRNICN HPYLSQLHVE ELEGYLPRHY LPSIVRLCGK
LEMLDRLLPK LKATGHRVLL FSTMTRLLDV MEDYLVWKKY KYLRLDGHTS GQERGALIDK
FNNPNSQAFI FLLSIRAGGV GVNLQAADTV IIFDTDWNPQ VDLQAQARAH RIGQKKEVLV
LRLETVQTVE EQVRASAEHK LGVANQSITA GFFDNNTSAE DRREYLESLL RGGKKEEAAP
VLDDDALNDL LARSEDEIDV FESIDKQRRE EEMATWLTVV QDSSTSGLDP SVMPSRLVTD
DDLKSFYHAM KIYESSNIKS PKVNVRRKGE LGGLDTQHYG RGKRAREVRS YEDQWTEEEF
EKLCQVDSPE SPQPGVISRN LDVSKVVKLE VPPECSKEPV QAKQEPASAA AAAGDSPPAK
RRRGRPRRSD ASLSPVTAPP NIGKQEAGTT VDGSSSAPIT TIHSISPDVT IDSTALSAAS
KPEVGTEIKG TVDIATPPDG TIKSVITTDN KGTASTAVLE GSIAKEVVMP AQSIHEPVSS
AAPHPPTPIT SRGRKAQTGE TPRRRGRKPK ALASGSAGDV ILSPVVAVGS GEAYASSVVS
SYPQGNMSSS HANATAGLQN DMIIVKPTAL LPEEVKGTPT PSGGDKDETV KTPLAEDIYA
GTVTTSGSGS SHLPKIAHIE NAGFVQGSID QNVSASTPII PMVSEGLLKV SEVLIADKPA
EKQGASRRRR KRTSGSEDTG VSTRQRSASK RLYGTPETAD NAGVSMSTGE KIGAVKEIDG
TSLQDASKGL PNIISPPYEK SGHDSQPSTP IAVPINEATL PSEFSEARAA HSDIPTAKES
TNSVGHDKVV GAHMQAPPSV SFQAQVQYET QKDYVGAHSG VRTTHTETIT TQSSVNPVID
NKLANVQFEA HASLLTSSRD ITTVPSEVHS AAPSKAPGRR KGSAREPCTR STFATVAPER
RGRLAGPKQP DDTEKVEISG NLSSAVCALP TQQQEDTTLK AATAVGEEQN NADNRVCEVS
SSVVCALPTQ QQEDTTLKAA HATASVGEEQ NNADNRVCEV SSSVVCALPT QQQEDTTLKA
AHATASVAEE QNNADNRVCK VSVPAGILEA RSELPNQTAS QAGAACTEEK GADLSTRIPA
LDEASGEREL PGGFQVHNSE QEPQMVSAAK PESANDEERK VHEVHQIVAD HNVLPSSAQD
GLQDNIGSGV DVYLDSCDKI TSYEAEQDDS TMVIAADDQT PCNVSDKDTL ASTEDDGNGL
QSECVPVDLI GAKQDNTMQE SNQPKEQGEC LEIIGSKFAL ETKLEKTEEA VDKSGGDNLP
CIEKIDDSHI ERSSPSPDKN ENSPAQVADG GQAGTETTMV EAVSAMSSDG SQDAHNATHD
LSTNDTVYCE EQKDPEIHLS GEVSISGGLL ELKLESLNQS ESACQSCEVT VQDINATLNN
QISALTESEE KRSSGHVLDT EHIRHEVLRD TVDDTSSPSS GEQDKLQVHI DTNTDVDMPC
SQRSADSEGE KEKDHPTDIV LVGCEGPCDV SGKDKLSPCD TSGKDTAAPT EGELNCLQSE
DTVIHVAGAK HETLQVEAIR NDISMGSSHA LPAMIQSTDS NLLEEEGESL EITDSKFPCA
MEQEKMEESL DKSVTDDQTC SQINDDSNNM DSQKVDSSFQ AADGGDFSVS KGTNAETATA
INTDVSDEGI NVPSTHSVKE ASTVETTTAI NTDVSDEAIN VPSTHSVKEA STVETTTAIN
TDVSDEAINV PSTHSVKEAS TVEIGASTND IAPACELSKD FESHVSGEVS KPEPRLEELN
QSKSVSQSVA ANAEETSTQL NIETPVLHES ESKSPECDAR GNENQKLVQT SAAETSIEGH
QEDTCEVVHT IDCSIVSPFG DQEIQDIPRE RIDSDTDFGI SACKRSAAFD CDKDLPAEIN
LTGSQATCDV PDKATPVPTI DDCNQETEDT VMDVIDAEEG TMEVEAMQLD DISKSSSSNS
QAALQSSHSN QHVNGDSKFE PSKKQDKTDE TSNESRGDNP THICTNDDSH DKNLVGYSPS
EDLNEGNPAH LADGGNLVGG NDTTTACADG LNELTSGSYV ALSSSLVVQD ITSISKMESV
QAGGEEIHHD CPDENHSAAM IPVVGTDIME NVSAASTRTI TIQPDTETEA ATSLTVLEGS
IAEKVGTQVQ SGHDLMTSIA PSPAPLPGDI HACTDVSYPV GVSESTLESP NHTTGHLDEA
CTEAQNASLS TQVPVLPELE QRKFSGSDTD GKIIIAELAS ASEHDKVHEV DNETGNDNIL
PSSVTEDALQ GEIGGCADMD GHIITESSEA ENNDSTVATI ANKPIAFDTS DKDTPPAEDG
NVLQHESTAV DVTGSNENNL EAEERQIDDI SRISSSHLAA ALQSTESNHP TEHAAPVEDD
GNGLQSEATA VDVADSKEDI MEVEDKQIAD ISGSSSSYLP AALHLTESNL PAEHAAPTED
GGKGLQSEDT AVDVSDSKED NMEVEDKLID DIHIGSSSFL PGTAESAELN QPVERSEGAA
VDVAGSKGDD MEVKGEKIYD ISRGSCNFLP GALVSAELNQ PAGHAAPTED DGNDLQSEGT
AVDVVGSKED NMEIKEKMDD ISRSPSSHLP GNSQSAESNQ PAVQENSENS GAVDAAVPSS
HTTLSSSKFA CVQELEKVDE TLRKSGDDNS TCLQTNDDAQ NKASGNYCTL EDKKENSSAQ
VANHGDLLLS KGTSVDDLDG CEEGHSGLST HSNEVASLVE IDKRTNDTTS GSELHVDPES
HVSHEVTTGS DLHVDPESHV SHEVSMPVVP SELTVELPNQ SEPACQFGTV IVEESNAILS
VQIPALAESE DTTSPGGVMH GTEVHVSEQV NIGPAAEPTS TKDHDMHEVD KETVHCTISP
PIGDQDNLQD NVDGKTDVLS AHQPHSDFVS GNDHSTETDL AGSQTPYDTS DKEDTTADLV
GAKQTAIEVE EMQIDGIPEC PSSNLPAVLQ STDSNQPTEE ERLEDSDSKF ASTNEQGTSD
MSGGDNAKCS LTNDDSRTMN LVGYSPSEDS NDDDSAQVGD GDDGDGVLGN KEGTDDVISA
ACTNDVSALK TESMDPHGSV EVNHDYPDDT IQSAATAAAV KQESGTEECA ASVPASESCI
SKETVTPPDC GDDQVAMKAP HPPTPLSDGT DVSADVQIQA GVSEAKLEQP NEMTSPASGA
AAEENNPTVS TQIPTETESE DRTPAGSTIQ GTEVDSAEQE TKVASDQPAP ASDSVLPSTE
PQDTVADDSV LPSTERKDTV DDKIDSSADD SVLQSTEPQV TVDDKIDSSA DDSVLQSTEP
QVTVDDKIDS SGDVSVLQAT EQQVPVDDKI DSSGDVSEK
//
